Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1267 140 3e-28
seq629 132 4e-26
seq1156 118 9e-22
seq5467 113 4e-20
seq4435 91.5 1e-13
>seq1267
Length=316221
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| |||| |||||| | ||||| | ||||| || | |
Sbjct 206201 ATGCAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAGT 206142
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| || | ||| |||||| || ||||| ||||| || || |||||
Sbjct 206141 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCAG 206082
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | |||||||| || || || || ||||||| | ||| | |||||||||
Sbjct 206081 CAAAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206022
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||||| || || || || |||||||| ||||| ||||||||
Sbjct 206021 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 205975
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | ||||| ||| |||| || | ||||| || | |
Sbjct 206429 ATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGT 206370
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| || ||| ||||||||||| || || || |||||
Sbjct 206369 GACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 206310
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | |||||||| || || || || ||||||| | ||| | |||||||||
Sbjct 206309 CAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206250
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||||| || || || || |||||||| ||||| ||||||||
Sbjct 206249 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 206203
Score = 129 bits (142), Expect = 5e-25
Identities = 163/222 (73%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || |||||||| || | || || ||| | ||||| | ||||||||| | |
Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || |||| | || |||| ||| ||||||||||| ||||| || ||
Sbjct 206597 GACACCATTGAAAATGTCA---AGGCCAAAATTCAA-GACAAAGAAGGAATTCCCCCAGA 206542
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||||| | | |||||||| || ||||| || || |||| |||||| || || ||
Sbjct 206541 CCAACAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTA 206482
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|| |||||||||||||| || || ||| ||||| | || ||
Sbjct 206481 TAACATTCAAAAAGAATCTACTCTTCATCTAGTGTTGAGACT 206440
>seq629
Length=499154
Score = 132 bits (146), Expect = 4e-26
Identities = 171/233 (73%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| |||||||| ||||| ||||| | || || ||| ||||||| | ||||||||| |
Sbjct 5735 ACCATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCA 5794
Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
|||||| || ||| | || ||||||| | || ||||| ||||| || ||||||
Sbjct 5795 AGTGACACAATAGAG--AATGTAAAAGCAAAGATCCAA-GACAAGGAAGGCATCCCACCT 5851
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
||||||||| | | || ||||| || |||||| | || |||| ||| || | ||
Sbjct 5852 GACCAACAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTGAC 5911
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||| || ||||||||||| || |||||| | || | ||||| || |||||
Sbjct 5912 TACAACATCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAGGGGAGG 5964
Score = 116 bits (128), Expect = 3e-21
Identities = 160/221 (72%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | || || ||| ||||||| | ||||||||| | |
Sbjct 5966 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 6025
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| | || ||||||| | || ||||| ||||| || |||||||||
Sbjct 6026 GACACAATAGAG--AATGTAAAAGCAAAGATCCAA-GACAAGGAAGGCATCCCACCTGAC 6082
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||| | | || ||||| || |||||| |||| |||| || || | ||||||
Sbjct 6083 CAACAGAGACTGATCTTTGCTGGTAAACAACTAGAGGATGGACGTACACTCTCAGATTAC 6142
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|| |||||||| || || || | ||| | || |||| ||
Sbjct 6143 AACATTCAAAAGGAGTCTACTTTGCATCTTGTCTTAAGACT 6183
>seq1156
Length=327524
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || |||||||| || ||||| || || | || || | ||||| ||| |
Sbjct 17491 AATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAGCCTAG 17550
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||| ||| | ||| ||||||| || |||||||| ||||| ||||| ||
Sbjct 17551 TGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCA 17610
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||| | | || ||||| || || || ||||||||| | || | ||||||||
Sbjct 17611 ACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAGATTACAA 17670
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||| ||||| ||||| || ||| | || ||| | ||| | || ||
Sbjct 17671 TATTCAGAAAGAGTCCACTCTTCATCTTGTTCTACGTCTACGTGGTGG 17718
>seq5467
Length=66102
Score = 113 bits (124), Expect = 4e-20
Identities = 166/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || ||| | ||||| | || ||||| | |
Sbjct 29819 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAGT 29760
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| | || ||||||| | || ||||||||||| ||||||||||||
Sbjct 29759 GACACAATTGAG--AATGTAAAAGCAAAGATCCAA-GACAAAGAAGGCATTCCACCTGAC 29703
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||| | | |||||||| || ||||| | || |||| || || | |||||
Sbjct 29702 CAACAGAGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTAT 29643
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|||||||| |||||||| || | ||| | || ||||| || | || ||||
Sbjct 29642 AATATTCAGAAAGAATCTACTTTGCATCTTGTCCTAAGACTGCGTGGTGGAA 29591
Score = 105 bits (116), Expect = 6e-18
Identities = 165/233 (71%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| ||||| || ||||| || || | || || ||| |||| || | ||||| || |
Sbjct 30050 ACCATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCT 29991
Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
||| ||||| ||| | || ||||||||| ||| ||||||||||| ||||||||
Sbjct 29990 AGTGATACTATTGAG--AATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCACCA 29934
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
||||| || | | |||||||| || |||||| | || |||| || || | ||
Sbjct 29933 GACCAGCAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGAC 29874
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| ||||| ||||| || || ||| | || || | | ||||||||
Sbjct 29873 TACAATATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGG 29821
>seq4435
Length=89394
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||| | || || || | || || ||||||| || | |
Sbjct 32655 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 32714
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| ||||| || |||| ||||||| || |||||||| |||||||| || |||
Sbjct 32715 GATACTATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAA 32774
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| | | |||||||| || |||||||||||||||| ||||| | ||||| |||
Sbjct 32775 CAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGGCGCACCTTATCAGATTATAAT 32834
Query 25179 ATTCAAAA 25186
||||| ||
Sbjct 32835 ATTCAGAA 32842
Score = 89.7 bits (98), Expect = 4e-13
Identities = 155/223 (70%), Gaps = 8/223 (4%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| |||||||||||||| | || || || | ||||| | || || ||| |
Sbjct 35816 AATGCAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGGTAGAGCCTAG 35875
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
||||| || || |||| |||| |||||| || || || || ||||||||||
Sbjct 35876 CGACACCATAGAGAACGTCA---AAGC-TAAAATCCAAGATAAGGAGGGAATTCCACCTG 35931
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| ||||| | | || ||||| || || || || ||||||| || || || ||||
Sbjct 35932 ATCAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAGATT 35991
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||||||||| || || || || ||||| | || || || ||
Sbjct 35992 ACAATATTCAGAAGGAGTCTACTTTACATCTGGTTCTGAGACT 36034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 431813393110295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |