Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1267 140 3e-28 seq629 132 4e-26 seq1156 118 9e-22 seq5467 113 4e-20 seq4435 91.5 1e-13 >seq1267 Length=316221 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| |||| |||||| | ||||| | ||||| || | | Sbjct 206201 ATGCAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAGT 206142 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| |||||| || ||||| ||||| || || ||||| Sbjct 206141 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCAG 206082 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || || || || ||||||| | ||| | ||||||||| Sbjct 206081 CAAAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206022 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || || || |||||||| ||||| |||||||| Sbjct 206021 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 205975 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| ||| |||| || | ||||| || | | Sbjct 206429 ATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGT 206370 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||||||||| || || || ||||| Sbjct 206369 GACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 206310 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | |||||||| || || || || ||||||| | ||| | ||||||||| Sbjct 206309 CAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206250 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || || || |||||||| ||||| |||||||| Sbjct 206249 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 206203 Score = 129 bits (142), Expect = 5e-25 Identities = 163/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | || || ||| | ||||| | ||||||||| | | Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || |||| ||| ||||||||||| ||||| || || Sbjct 206597 GACACCATTGAAAATGTCA---AGGCCAAAATTCAA-GACAAAGAAGGAATTCCCCCAGA 206542 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| | | |||||||| || ||||| || || |||| |||||| || || || Sbjct 206541 CCAACAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTA 206482 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || |||||||||||||| || || ||| ||||| | || || Sbjct 206481 TAACATTCAAAAAGAATCTACTCTTCATCTAGTGTTGAGACT 206440 >seq629 Length=499154 Score = 132 bits (146), Expect = 4e-26 Identities = 171/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| ||||| ||||| | || || ||| ||||||| | ||||||||| | Sbjct 5735 ACCATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCA 5794 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 |||||| || ||| | || ||||||| | || ||||| ||||| || |||||| Sbjct 5795 AGTGACACAATAGAG--AATGTAAAAGCAAAGATCCAA-GACAAGGAAGGCATCCCACCT 5851 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||||||| | | || ||||| || |||||| | || |||| ||| || | || Sbjct 5852 GACCAACAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTGAC 5911 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||||||||| || |||||| | || | ||||| || ||||| Sbjct 5912 TACAACATCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAGGGGAGG 5964 Score = 116 bits (128), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || ||| ||||||| | ||||||||| | | Sbjct 5966 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 6025 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || ||||||| | || ||||| ||||| || ||||||||| Sbjct 6026 GACACAATAGAG--AATGTAAAAGCAAAGATCCAA-GACAAGGAAGGCATCCCACCTGAC 6082 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || |||||| |||| |||| || || | |||||| Sbjct 6083 CAACAGAGACTGATCTTTGCTGGTAAACAACTAGAGGATGGACGTACACTCTCAGATTAC 6142 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || |||||||| || || || | ||| | || |||| || Sbjct 6143 AACATTCAAAAGGAGTCTACTTTGCATCTTGTCTTAAGACT 6183 >seq1156 Length=327524 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||| || ||||| || || | || || | ||||| ||| | Sbjct 17491 AATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAGCCTAG 17550 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||| ||| | ||| ||||||| || |||||||| ||||| ||||| || Sbjct 17551 TGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCA 17610 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || ||||| || || || ||||||||| | || | |||||||| Sbjct 17611 ACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAGATTACAA 17670 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| ||||| ||||| || ||| | || ||| | ||| | || || Sbjct 17671 TATTCAGAAAGAGTCCACTCTTCATCTTGTTCTACGTCTACGTGGTGG 17718 >seq5467 Length=66102 Score = 113 bits (124), Expect = 4e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| | ||||| | || ||||| | | Sbjct 29819 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAGT 29760 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || ||||||| | || ||||||||||| |||||||||||| Sbjct 29759 GACACAATTGAG--AATGTAAAAGCAAAGATCCAA-GACAAAGAAGGCATTCCACCTGAC 29703 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | |||||||| || ||||| | || |||| || || | ||||| Sbjct 29702 CAACAGAGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTAT 29643 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| |||||||| || | ||| | || ||||| || | || |||| Sbjct 29642 AATATTCAGAAAGAATCTACTTTGCATCTTGTCCTAAGACTGCGTGGTGGAA 29591 Score = 105 bits (116), Expect = 6e-18 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| || || | || || ||| |||| || | ||||| || | Sbjct 30050 ACCATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCT 29991 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||| ||||| ||| | || ||||||||| ||| ||||||||||| |||||||| Sbjct 29990 AGTGATACTATTGAG--AATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCACCA 29934 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||| || | | |||||||| || |||||| | || |||| || || | || Sbjct 29933 GACCAGCAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGAC 29874 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| ||||| || || ||| | || || | | |||||||| Sbjct 29873 TACAATATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGG 29821 >seq4435 Length=89394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| | || || || | || || ||||||| || | | Sbjct 32655 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 32714 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || |||| ||||||| || |||||||| |||||||| || ||| Sbjct 32715 GATACTATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAA 32774 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | |||||||| || |||||||||||||||| ||||| | ||||| ||| Sbjct 32775 CAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGGCGCACCTTATCAGATTATAAT 32834 Query 25179 ATTCAAAA 25186 ||||| || Sbjct 32835 ATTCAGAA 32842 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| |||||||||||||| | || || || | ||||| | || || ||| | Sbjct 35816 AATGCAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGGTAGAGCCTAG 35875 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| || || |||| |||| |||||| || || || || |||||||||| Sbjct 35876 CGACACCATAGAGAACGTCA---AAGC-TAAAATCCAAGATAAGGAGGGAATTCCACCTG 35931 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| | | || ||||| || || || || ||||||| || || || |||| Sbjct 35932 ATCAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAGATT 35991 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||||| || || || || ||||| | || || || || Sbjct 35992 ACAATATTCAGAAGGAGTCTACTTTACATCTGGTTCTGAGACT 36034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431813393110295