Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3845 138 1e-27 seq6658 118 1e-21 seq5418 116 4e-21 seq3877 107 2e-18 seq8383 98.7 1e-15 seq592 89.7 6e-13 seq5299 87.8 2e-12 seq941 87.8 2e-12 seq1898 84.2 2e-11 seq928 82.4 8e-11 >seq3845 Length=110360 Score = 138 bits (152), Expect = 1e-27 Identities = 164/219 (75%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 ||||||| || || ||| ||||||||||| || || ||||| || ||||| ||| Sbjct 71055 TCTTGAGGCAAACT---TACAAGATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAA 70999 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT-AG 93576 |||| || || ||||| |||| ||||| ||||| | || ||||| | | || || Sbjct 70998 GCCAGGATGTGAGAAATAAAGTGTTGTTCATCTTCTTTTAAATTCTCCCACT-GTATCAG 70940 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||||| || ||||| |||||||| |||||||| || || || |||||||| || ||||| Sbjct 70939 GTCTTTGGACAGATCAACTTCTTCTACAGTCCAGAATGAAGCCTCTGCTTTCTTATACAT 70880 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 | ||| |||||| | |||| ||| ||||| || ||||| Sbjct 70879 CTGCCAGATGTCTGGGTATTCAATGGGAAAAATAACAAA 70841 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 93356 TCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCA 93415 |||| |||||||| || ||||||| | |||||||| ||||||||||| || || ||| Sbjct 72341 TCTCTGATGTATGTGTCAATTAACAAACTGTACATTTCTGAATGGACATTTTCAATGGCA 72282 Query 93416 ATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCT 93475 |||||||| || || ||||| |||||||| || | || ||||| || |||||| || Sbjct 72281 ATTTGGAAACCATAAAAACACCTAGCTTCTGTTACTTGAACTTCCTGGCTAAATCTTTCC 72222 Query 93476 AC 93477 || Sbjct 72221 AC 72220 >seq6658 Length=47451 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 93491 ACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 ||||| ||||| || ||||| || ||||| | || |||||||| ||| | || ||| Sbjct 26440 ACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAAGTGTCTTTCTTCA 26499 Query 93551 TCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAA 93610 ||| | ||| | |||||| | | ||||| || | || |||||||| ||||||| Sbjct 26500 GGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTCTTCAGCAGTCCAG 26559 Query 93611 AACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 || || || |||||||| |||||||||||||| || ||| | || | |||||| || || Sbjct 26560 AAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACTCAATTGGTAAAATT 26619 Query 93671 ACAAAACG 93678 ||||| || Sbjct 26620 ACAAATCG 26627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 93365 TATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAAT 93424 || ||||| || || ||| |||||||||||||| | ||||||| |||||| || || Sbjct 25532 TAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACTGCAATCTGAAAG 25591 Query 93425 CCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATC 93470 | ||||||||| | |||||| || ||||| || || ||| | |||| Sbjct 25592 CTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATC 25637 >seq5418 Length=65370 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| |||||| || || || | ||| || | ||| || || || || ||||| || ||| Sbjct 8145 ATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTTTTAGCCAGAAAATT 8086 Query 93188 GAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCG 93247 ||||||||| ||||| |||||||| ||||| || || ||||| ||||||| || || Sbjct 8085 GAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAGCCACAACTCGCTCA 8026 Query 93248 GCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATA 93307 |||| |||| | | | ||| ||||| | | |||||| || ||||| ||||| | | Sbjct 8025 CCAAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTCTGCTTTCTTCTTTACA 7966 Query 93308 CAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || || | || || || || || || || Sbjct 7965 CATGGCAAGGTCTCAATTGCATTGAAAAG 7937 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || ||||||| | ||||||||| || || ||||| || || ||||||||| Sbjct 7515 ATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACATTTTCAATGGCAATTTGG 7456 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || || || ||||| |||||||| || | ||||||||| || ||||| ||| || Sbjct 7455 AAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTCCTGGCTAAATCGCTCGAC 7400 >seq3877 Length=101576 Score = 107 bits (118), Expect = 2e-18 Identities = 88/105 (84%), Gaps = 8/105 (8%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| |||||||||||| |||| | | | Sbjct 61951 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGATCTGGT--CCTCGTAAGAGGG 62008 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||||||||||| ||||||||| | ||| ||||||| Sbjct 62009 CGTGGGTTCGAACCCCACTTCTGACAAATGTTAATT--AATTTTT 62051 >seq8383 Length=35124 Score = 98.7 bits (108), Expect = 1e-15 Identities = 79/94 (84%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| |||||||||||| |||| | | | Sbjct 6676 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGATCTGGT--CCTCGTAAGAGGG 6733 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 |||||||||||||||||| |||||| | | ||| Sbjct 6734 CGTGGGTTCGAACCCCACTTCTGACATACTTTTA 6767 >seq592 Length=515889 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/85 (86%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 |||| |||||||||||| |||||||||||| |||||||||||| | | | || || |||| Sbjct 5194 CAGGATGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTTCGTAGGAAGACGTG 5252 Query 126326 GGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||| |||| || || Sbjct 5253 GGTTCGAACCCCACTCCTGGCATAT 5277 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-C 126322 || |||| |||||||||||| |||||||||||| |||||||||||| | | | | || | Sbjct 9258 AGCCAGGATGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTTCATAAGAAGAC 9316 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||| |||||| |||| ||||| Sbjct 9317 GTGGGTTCGATCCCCACTCCTGGCAAAT 9344 >seq5299 Length=70095 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/79 (86%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG--CGTG 126325 |||| |||||||||||| |||||||||||| |||||||||||| | || ||| |||| Sbjct 5089 CAGGATGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCCTCTTAAGAGGACGTG 5031 Query 126326 GGTTCGAACCCCACACCTG 126344 |||||||||||||| |||| Sbjct 5030 GGTTCGAACCCCACTCCTG 5012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/79 (86%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG--CGTG 126325 |||| |||||||||||| |||||||||||| |||||||||||| | || ||| |||| Sbjct 7207 CAGGATGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCCTCTGAAGAGGACGTG 7149 Query 126326 GGTTCGAACCCCACACCTG 126344 |||||||||||||| |||| Sbjct 7148 GGTTCGAACCCCACTCCTG 7130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/79 (86%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG--CGTG 126325 |||| |||||||||||| |||||||||||| |||||||||||| | || ||| |||| Sbjct 9521 CAGGATGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCCTCTGAAGAGGACGTG 9463 Query 126326 GGTTCGAACCCCACACCTG 126344 |||||||||||||| |||| Sbjct 9462 GGTTCGAACCCCACTCCTG 9444 >seq941 Length=380992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/82 (87%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 |||| |||||||||||| |||||||||||| |||||||||||| | | | || || |||| Sbjct 309205 CAGGATGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTTCGTAGGAAGACGTG 309263 Query 126326 GGTTCGAACCCCACACCTGACA 126347 |||||||||||||| |||| || Sbjct 309264 GGTTCGAACCCCACTCCTGGCA 309285 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/83 (86%), Gaps = 3/83 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 |||| |||||||||||| |||||||||||| |||||||||||| | | | || || |||| Sbjct 310310 CAGGATGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTTCGTAGGAAGACGTG 310252 Query 126326 GGTTCGAACCCCACACCTGACAA 126348 |||||||||||||| ||| ||| Sbjct 310251 GGTTCGAACCCCACTTCTGGCAA 310229 >seq1898 Length=229985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 126255 TTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC 126314 || |||||| | |||| |||||||||||| |||||||||||| |||||||||||| | | Sbjct 110911 TTATATTTATAC-CAGGATGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCCTC 110968 Query 126315 TCGGGAG--CGTGGGTTCGAACCCCACACCTG 126344 ||| |||||||||||||||||| |||| Sbjct 110969 ATAAGAGGACGTGGGTTCGAACCCCACTCCTG 111000 >seq928 Length=389219 Score = 82.4 bits (90), Expect = 8e-11 Identities = 67/79 (85%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG--CGTG 126325 |||| |||||||||||| |||||||||||| |||||||||||| | | ||| |||| Sbjct 54683 CAGGATGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCCTCATAAGAGGACGTG 54741 Query 126326 GGTTCGAACCCCACACCTG 126344 |||||||||||||| |||| Sbjct 54742 GGTTCGAACCCCACTCCTG 54760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554864502757320