Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq629 176 8e-39 seq5467 170 4e-37 seq4435 163 5e-35 seq1156 154 3e-32 seq1267 143 5e-29 >seq629 Length=499154 Score = 176 bits (194), Expect = 8e-39 Identities = 157/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 || ||||| ||||| ||||| ||||| |||||||| | ||||| |||| || || || Sbjct 6162 GTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGTACGTCCATCCTCTAGTTGTTTACCA 6103 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || ||||| |||||||| ||||| ||||||||||||||||| |||||||| || Sbjct 6102 GCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTT 6043 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || ||| || ||||| || || |||||||| |||||||||||||| ||||||||| Sbjct 6042 ACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTC 5983 Query 68445 TTGACGAATATCTGCAT 68461 || || || || ||||| Sbjct 5982 TTCACAAAAATTTGCAT 5966 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||||| || || |||||||||||||| || || || ||||| | ||||| || Sbjct 5946 ACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTCC 5887 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || || || || ||||| |||||||| ||||| ||||||||||||||||| Sbjct 5886 AGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 5827 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||| || || ||| || ||||| || || |||||||| |||||||||||| Sbjct 5826 ATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTT 5767 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || || || ||||| Sbjct 5766 CCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 >seq5467 Length=66102 Score = 170 bits (188), Expect = 4e-37 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 || || ||||| || || |||||||| || || |||| ||||| || | ||| || || Sbjct 29623 GTAGATTCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCATCCTCCAGCTGTTTACCT 29682 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || ||||| |||||||| |||||||||||||| |||||||| |||||||| || Sbjct 29683 GCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTT 29742 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || ||| || ||||| || ||| || ||||| ||||| |||||||| ||||||||| Sbjct 29743 ACATTCTCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGTC 29802 Query 68445 TTGACGAATATCTGCAT 68461 ||||| || |||||||| Sbjct 29803 TTGACAAAAATCTGCAT 29819 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| |||| || || || || || |||||||| || || || || || |||| ||| Sbjct 29833 CGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAAAGGGTCCGTCCA 29892 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || | || || || || || ||||||||||| ||||| |||||||| ||||| ||| Sbjct 29893 TCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGAATACCTTCTTTG 29952 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| ||||| || || ||| || || || | ||||||||||| || ||| Sbjct 29953 TCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACTTCCAGAGTAATG 30012 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||| || || || |||||||| Sbjct 30013 GTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 >seq4435 Length=89394 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || | || ||||||||| || || || ||||| || ||||| ||||| || Sbjct 36727 CCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGAC 36668 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| || |||||||| || || || | ||||||||||| || || Sbjct 36667 AGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGG 36608 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| || || || ||||| || || | |||||| Sbjct 36607 ATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACC 36548 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||||||||||||| || || ||||| || || || |||||| Sbjct 36547 TCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || | || || ||||| || || |||||||| |||||||||||||| | Sbjct 36501 TTCCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTG 36442 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || ||||||||||||||||| || || || || || | || |||||||| |||| Sbjct 36441 ACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTG 36382 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || || || || ||||| || || || || ||||| | ||| | Sbjct 36381 GAATTCCTTCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAA 36322 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||| || || || || || || || |||||||| |||||||| Sbjct 36321 CTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | || |||| |||| || ||||| || || || || ||||| || Sbjct 36043 CCACCACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGAC 35984 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| |||||||| || || || || | ||||||||| || |||||| Sbjct 35983 AAGGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 35924 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||| ||||| || || || |||||| ||| |||||||| ||| | ||||| Sbjct 35923 ATTCCCTCCTTATCTTGGATTTTAGCTTTGACGTTCTCTATGGTGTC-GCTAGGCTCTAC 35865 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| ||||| || || || || || ||||| || |||||||||||| Sbjct 35864 CTCCAAAGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCATT 35816 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || || |||||||| || | || | |||||||||||| || ||||| || || || Sbjct 32842 TTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATC 32783 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | ||||||||| || |||||||| ||||| || || || || ||||| || ||| || Sbjct 32782 AATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCA 32723 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 || || || | ||| ||||| | ||| || || || || || || || |||||||| Sbjct 32722 ATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAG 32663 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 32662 ATCTGCAT 32655 >seq1156 Length=327524 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||||||||| || || || ||||| || ||||| || |||||||||| Sbjct 17699 CAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATCTTCTA 17640 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || ||||| | ||| ||||| || || ||||| ||||| || ||||| | Sbjct 17639 GCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGA 17580 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | |||||||| || ||| || ||||| | |||||||| ||||| || || |||| Sbjct 17579 TTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGTCTTTC 17520 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || | ||| || || || ||||||||| || Sbjct 17519 CTGTCAAGGTTTTTACAAAGATCTGCATTTTG 17488 >seq1267 Length=316221 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | ||| || | || || || || |||||||| |||||||| || || Sbjct 206431 CCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGAC 206490 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | ||||| || ||||| || || || || || | ||| |||||||| || ||| Sbjct 206491 AATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGA 206550 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| || |||||||| || |||||||| | || ||| Sbjct 206551 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACT 206610 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| |||||||| || || || || || || |||||||| Sbjct 206611 TCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || | || || ||||| || || ||||||||||| || || ||||| || Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || |||||||| |||||||| || || || || | ||||| ||||| || || Sbjct 206035 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGG 206094 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || || || || || || ||||| ||| || || ||||| || ||| ||| Sbjct 206095 ATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACT 206154 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||| ||||| || || || ||||| || || |||||||| Sbjct 206155 TCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || | || || ||||| || || ||||||||||| || || ||||| || Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || |||||||| |||||||| || || || || | || || ||||| || || Sbjct 206263 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 206322 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| ||||| ||||| || || || ||||| | ||| ||| Sbjct 206323 ATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACT 206382 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| |||||||| || || ||||| || || || |||||||| Sbjct 206383 TCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 68225 ATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTT 68284 |||||| | || || || | | |||||| ||||| || || ||||| || || ||||| Sbjct 205737 ATTTTACTGACCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTT 205796 Query 68285 ATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTG 68344 |||||| || | || || ||||| || | ||||| || || || || | || || || Sbjct 205797 ATAATCTGACAAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTG 205856 Query 68345 GTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGC 68404 ||| || || || || || || || ||||| || ||||| || || || ||||| Sbjct 205857 GTCTGGAGGGATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACT 205916 Query 68405 TGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||| ||||||| |||||||||||| || || || ||||| || || || ||||| Sbjct 205917 TGGTTCAACTTCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918318464337960