Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1156 100 2e-16 seq5467 98.7 7e-16 seq1267 95.1 9e-15 seq2201 89.7 4e-13 seq629 87.8 1e-12 >seq1156 Length=327524 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 21826 AGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGG 21885 ||| ||||||||| || ||| | ||||| || || || || || |||||| | ||| | Sbjct 17484 AGTTCAAAATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAG 17543 Query 21886 AAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTG 21945 | | || || | | || | ||| |||||| |||||||| || | || Sbjct 17544 AGCCTAGTGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCC 17603 Query 21946 TAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCG 22005 | ||||||||| | || ||||| || || || ||||||||| || ||| | | | Sbjct 17604 CTGATCAACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAG 17663 Query 22006 ATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||||| || || ||||||||| | || ||||| |||| || || Sbjct 17664 ATTACAATATTCAGAAAGAGTCCACTCTTCATCTTGTTCTACGTCTACGTGGTGG 17718 >seq5467 Length=66102 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| |||| |||||||||||||| ||||| ||| | Sbjct 30047 ATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCTAGT 29988 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||||| || ||||| ||| | || | |||| Sbjct 29987 GATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAG 29928 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || ||||| || |||||||| || ||| | || | | || |||||| Sbjct 29927 CAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGACTACAAT 29868 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| ||||||||| |||| | || || ||||||| Sbjct 29867 ATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGG 29821 >seq1267 Length=316221 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || || |||||||| ||| ||||| ||| | Sbjct 205973 ATGCAAATCTTTGTTAAGACTCTGACAGGTAAAACCATCACCCTGGAAGTTGAACCAAGT 205914 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| ||||||||||| | ||| | |||| Sbjct 205913 GACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAGGGGATCCCTCCAGACCAG 205854 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || ||||||||||| ||||| || ||| || ||| || | ||||| || Sbjct 205853 CAGAGGTTAATTTTTGCTGGCAAGCAACTGGAGGATGGAAGAACCTTGTCAGATTATAAC 205794 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || |||||||| || || || || | ||||| Sbjct 205793 ATACAGAAGGAGTCGACCCTCCACTTAGTATT 205762 >seq2201 Length=213340 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||||| ||||||||||| || || || |||||| |||| || | |||| Sbjct 161502 ACCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACTCTGTCTGATT 161561 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| || |||||||||||||||||||| | || || | ||| |||| || Sbjct 161562 ACAACATCCAGAAGGAATCTACTCTTCACTTAGTTCTAAGATTAAGAGGTGG 161613 >seq629 Length=499154 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||||||||| ||||||||||| ||||||||||| ||| | || | | |||| Sbjct 6081 ACCAACAGAGACTGATCTTTGCTGGTAAACAACTAGAGGATGGACGTACACTCTCAGATT 6140 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGAT---ATT 22065 |||| ||||| ||||| |||||| | ||| | || ||| | | || || |||| ||| Sbjct 6141 ACAACATTCAAAAGGAGTCTACTTTGCATCTTGTCTTAAGACTGCGTGGTGGATCAAATT 6200 Query 22066 AATAATAAAAACCATAA 22082 || ||||| ||| || Sbjct 6201 AAGGATAAATTCCAGAA 6217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356873050079722