Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3845 111 3e-19 seq6658 105 1e-17 seq1632 84.2 4e-11 >seq3845 Length=110360 Score = 111 bits (122), Expect = 3e-19 Identities = 164/227 (72%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || || || |||| || | |||||||| || || ||||| |||||| Sbjct 72763 CTTTTCAATGCAATTGAAACCTTGCCTTGTGTGAAGAAGAAAGCAGATTGGGCTCTCAAC 72822 Query 42669 TGGATCGAGAGTC--CCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 ||||| | ||| || || || || || || ||| | | ||||||||| | || || Sbjct 72823 TGGATAG---GTCATCCTACAGCTACTTTTGGTGAGCGAGTTGTAGCCTTTGCTGCTGTG 72879 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTC 42784 |||||||| ||||| || || | || || || || |||||||| ||| ||| |||| | Sbjct 72880 GAGGGCATATTCTTTTCTGGGTCATTTGCATCAATATTCTGGCTTAAGAAGAGAGGTCT- 72938 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 |||||| || | || ||| || ||||| ||||| || || |||| Sbjct 72939 GATGCCTGGTTTGACATTCAGTAATGAACTTATCAGTAGAGATGAGG 72985 >seq6658 Length=47451 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || || || | ||||| | ||||||||||| || ||||| || ||| Sbjct 25056 CTCTTCAATGCTATTGAAACCTTACCCTGTGTTAAGAAGAAGGCTGATTGGGCCCTGAAC 24997 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||| || | | || | || ||| | || |||||||| | || || || Sbjct 24996 TGGATTGATAACAATGCTGCCCCATTTCCTGAGCGACTTGTAGCCTTCGCTGCTGTAGAA 24937 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 || |||||||| ||||| |||| ||||| ||||||||| | ||| ||| || |||| Sbjct 24936 GGGATCTTCTTTTCGGGTTCCTTTGCCTCTATCTTCTGGTTAAAGAAGAGGGGAATGATG 24877 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || || | || ||| |||||||| || ||||| || |||| Sbjct 24876 CCTGGCTTGACTTTCAGTAACGAACTGATAAGCAGAGATGAGG 24834 >seq1632 Length=265768 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||||| |||||||| || || | |||||| || |||||||| || |||| ||| || | Sbjct 23374 TGTACTCTACAATCTCTGTACATAAGTTACTACATTTGATGGTTCCAAGGTTCTGCTGGT 23433 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841 | ||||| ||| ||||| || |||||||||||| | || ||| || || | ||| | Sbjct 23434 TTGACTTTCTGTTACAGGCATCTTTGTAGAGCATGTATGGTGTCCCAGTTTCAACCTGAG 23493 Query 244842 C 244842 | Sbjct 23494 C 23494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940953826597680