Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5467 87.8 1e-12 seq112184 84.2 2e-11 >seq5467 Length=66102 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||| ||||| ||||||||||| || ||||| || || ||||| || | Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGA- 29879 Query 33961 AATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| || || |||| ||| || || ||||| || || | ||||| || || Sbjct 29880 AAGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGG 29939 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCAC-ACTATCAGTAGATTCGC 34078 | | |||||||| ||||||| |||| |||| | ||||| ||| ||| Sbjct 29940 AATACCTTCTTTGTCTTGAATTTTT-GCTTTTACATTCTCAATAGTATCACTAGGTTCTA 29998 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || ||||| || ||||| |||||||||||||| ||||| Sbjct 29999 CTTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 >seq112184 Length=1251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/97 (81%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| |||| |||||||||||| Sbjct 293 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAAAGTACGATCTAAGGAACA 352 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 114428 | ||| ||| ||||||||||| ||| || |||| Sbjct 353 ACGGCTG-GATAATGAGCCATTCGCGGTTTCACCTTA 388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/97 (81%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| |||| |||||||||||| Sbjct 293 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAAAGTACGATCTAAGGAACA 352 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 115625 | ||| ||| ||||||||||| ||| || |||| Sbjct 353 ACGGCTG-GATAATGAGCCATTCGCGGTTTCACCTTA 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395674551887986