Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4435 168 2e-36 seq1267 125 2e-23 seq1156 125 2e-23 seq5467 116 9e-21 seq629 113 1e-19 >seq4435 Length=89394 Score = 168 bits (186), Expect = 2e-36 Identities = 150/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || |||||||| || | | ||||| || |||||||||||||| ||||| || ||| Sbjct 32842 TTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATC 32783 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | | |||||| ||| ||||||||||||||||||||||| |||||||||||||| Sbjct 32782 AATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCA 32723 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 |||| ||| || | ||| |||||||| || || ||||| || || ||||| |||||||| Sbjct 32722 ATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAG 32663 Query 288466 ATCTGCAT 288473 |||||||| Sbjct 32662 ATCTGCAT 32655 Score = 159 bits (176), Expect = 8e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| ||||| || | || || | || |||||||| ||||||||||| ||| Sbjct 36463 TCTTTCTGGATGTTATAATCTGACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAG 36404 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | |||||| ||| ||||||||||||||||||||||| |||||||| ||| Sbjct 36403 ATTAACCTCTGTTGGTCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACATTT 36344 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || | ||| |||||||| || || ||||| || || ||||| |||||| Sbjct 36343 TCAATAGTGTCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACG 36284 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 36283 AAGATCTGCAT 36273 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || ||||| | || || || || ||||| || || | Sbjct 36043 CCACCACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGAC 35984 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| || || ||||| || ||||| | | |||||| | ||| Sbjct 35983 AAGGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 35924 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||| |||||||| ||||| ||||| ||||| | ||||| | ||||| Sbjct 35923 ATTCCCTCCTTATCTTGGATTTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACC 35864 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||||| ||||| || || || ||||| || |||||||||||| Sbjct 35863 TCCAAAGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCATT 35816 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || | |||||||| | |||| ||| || || || |||||||| | Sbjct 36275 CATG-CCACCACGCAACCTAAGTACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAAT 36217 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | ||||| || ||||| || ||||| ||||| || |||| | |||||| Sbjct 36216 CTGATAAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTG 36157 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| |||||||||||||| || ||||| ||||| || ||||| |||| ||| || | || Sbjct 36156 GTGGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTT 36097 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || || || || || || || || || || || || || ||||| Sbjct 36096 CAACTTCCAGAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 116 bits (128), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || ||||| ||||| | |||| || |||||| || || || || || Sbjct 36730 TGGCCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCT 36671 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || | ||| ||||| ||||| || || || || || | | ||||| ||| Sbjct 36670 GACAGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGG---TCT 36614 Query 288364 GG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || |||||| || ||||| || || || |||||||| ||||| || | ||| || | | Sbjct 36613 GGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGT 36554 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || ||||| || || || ||||||||||| || || || |||||| Sbjct 36553 TCTACCTCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 >seq1267 Length=316221 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| ||||| || || | | || | ||| ||||| || || |||||||| || Sbjct 206011 TCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAA 206070 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | || || ||||| ||| || ||||||||||||||||| || || ||| Sbjct 206071 ATCAACCTTTGCTGG---TCTGGAGGGATCCCCTCTTTATCCTGGATTTTAGCCTTTACG 206127 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || || | ||| ||||| || ||||| || || || ||||||||||| Sbjct 206128 TTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTA 206187 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 206188 ACAAAGATCTGCAT 206201 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || |||||||| | || ||||||| || ||||||||| || ||||||| Sbjct 206427 CATGCCC-CCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGT 206485 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | ||||| || || || || |||||||| || || || | | |||||| | Sbjct 206486 CTGACAATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGG---T 206542 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| ||||||||||| || || ||||| || || || ||||| || | || || | Sbjct 206543 CTGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAG 206602 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| || || || || || || || || || |||||||| Sbjct 206603 GCTCCACTTCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| ||||| || || | | || | ||| ||||| || || |||||||| || Sbjct 206239 TCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAA 206298 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| || ||||| |||||||||||| || ||||| || || ||||| Sbjct 206299 ATCAACCTCTGCTGG---TCTGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTCACA 206355 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | ||| ||||| || || || || || ||||| || || || Sbjct 206356 TTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTC 206415 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 206416 ACAAAGATCTGCAT 206429 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||||||||| ||||| || ||||| ||||| |||| || || | ||| Sbjct 205864 GGGATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCA 205923 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || || ||||||||||| || || || ||||| Sbjct 205924 ACTTCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 >seq1156 Length=327524 Score = 125 bits (138), Expect = 2e-23 Identities = 173/241 (72%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 288237 TCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATT 288296 || ||||| ||||| || || | || || ||||||| ||| ||||| || ||||| Sbjct 17727 TCCTACATA-CCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATT 17669 Query 288297 ATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG 288356 || || | || || | ||| ||||||| || |||||||| || || | | |||||| Sbjct 17668 GTAATCTGATAGTGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTG 17609 Query 288357 AGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 | | || |||||||||||||| |||||||| || || || || || |||| || || Sbjct 17608 ATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACT 17549 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 | |||||||| | || || ||||| || |||| || || || || ||||||||| | Sbjct 17548 AGGCTCTACTTCTAAGGTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCATTTT 17489 Query 288477 G 288477 | Sbjct 17488 G 17488 >seq5467 Length=66102 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| || ||| ||||||||||| ||||| | || || ||||| || Sbjct 29836 AGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAAAGGGTCCGTCCATCC 29895 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | |||||| ||||| || || || | || || ||| || |||||||| || Sbjct 29896 TCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGAATACCTTCTTTGTCT 29955 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || ||||| ||||| || || || |||| ||| || | ||||||||| || || || || Sbjct 29956 TGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACTTCCAGAGTAATGGTT 30015 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || |||||||| Sbjct 30016 TTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 >seq629 Length=499154 Score = 113 bits (124), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | || || || || || || | |||||| || || || Sbjct 5929 TTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAA 5870 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | |||||| | |||||| ||||| || || ||||| || ||||| || || Sbjct 5869 GATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATT 5810 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||||| | || || | || ||||| | ||||| || || || || || ||||| || Sbjct 5809 CTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCAC 5750 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAA 288498 || || ||||| || | | ||||| | |||||| Sbjct 5749 AAAAATTTGCATGGTGGT-CTATAATAATAATAATAA 5714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175319718250654