Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq629 122 9e-23 seq10433 116 4e-21 seq5467 116 4e-21 seq4435 113 5e-20 seq3155 113 5e-20 seq3613 105 7e-18 seq77675 104 3e-17 seq1598 104 3e-17 seq887 104 3e-17 seq80409 102 9e-17 seq4682 102 9e-17 seq196739 100 3e-16 seq3701 100 3e-16 seq647 100 3e-16 seq524 100 3e-16 seq1471 98.7 1e-15 seq8129 96.9 4e-15 seq256919 93.3 5e-14 seq100255 87.8 2e-12 seq14773 87.8 2e-12 seq1267 86.0 7e-12 seq263599 82.4 8e-11 >seq629 Length=499154 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41997 AACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCA 42056 || || | |||||| || |||||||||||| |||||||| | || || || | || Sbjct 6177 AAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGTACGTCCATCC 6118 Query 42057 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 ||||| || |||||||| || || |||| ||| ||||| | ||| | || |||||||| Sbjct 6117 TCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCT 6058 Query 42117 ATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 42176 ||| ||| ||| | || | | ||||| || | ||||| || | ||||||||| Sbjct 6057 TGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTT 5998 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| ||||| |||||||| Sbjct 5997 TTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| || ||||| |||| || || || | || || || || |||||||| || Sbjct 5928 TCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAG 5869 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || |||| ||| ||||| | ||| | || |||||||| ||| ||| ||| | || Sbjct 5868 ATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTC 5809 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || | ||||| || | ||||||||||| || || || ||||| ||| Sbjct 5808 TCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACA 5749 Query 42198 AAGATTTGCAT 42208 || |||||||| Sbjct 5748 AAAATTTGCAT 5738 >seq10433 Length=18727 Score = 116 bits (128), Expect = 4e-21 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 17111 AAATATTTACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 17170 Query 57058 TCACCACTATACTACCGAGGATTGAATAT 57086 ||||||||||||||||||||| ||||||| Sbjct 17171 TCACCACTATACTACCGAGGAATGAATAT 17199 >seq5467 Length=66102 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || |||| |||| ||| | || |||||||| |||||||| |||| Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || ||||| | || || || || ||||| || || ||||||| |||||||| | ||| Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| ||| |||||| ||| | || | | || || || | ||| || Sbjct 29941 ATACCTTCTTTGTCT-TGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTAC 29999 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||||||||| ||||| || || |||||||| ||||| Sbjct 30000 TTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 >seq4435 Length=89394 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| || || |||||| |||||||||||||| | || || || | || || Sbjct 36025 ACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGTACGTCCATCTTCC 35966 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| ||||| || || | || || || || | ||| | | |||||| || | Sbjct 35965 AACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCCCTCCTTATCTTGG 35906 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| ||||| || | | |||||||| | || || || | ||||| || ||| Sbjct 35905 ATTTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACCTCCAAAGTGATTGTCTTG 35846 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || ||||||||||||||||| || |||||||| Sbjct 35845 CCTGTTAGCGTCTTTACAAATATCTGCATTTT 35814 >seq3155 Length=145643 Score = 113 bits (124), Expect = 5e-20 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| |||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 127522 AAATATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 127581 Query 57057 CTCACCACTATACTACCGAGGATTGAATA 57085 |||||||||||||||||||||||| |||| Sbjct 127582 CTCACCACTATACTACCGAGGATTAAATA 127610 >seq3613 Length=121273 Score = 105 bits (116), Expect = 7e-18 Identities = 83/97 (86%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 56994 TATGAAAAATTTT-CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 || |||||| || |||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 18386 TAAGAAAAACATTACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 18445 Query 57053 CATACTCACCACTATACTACCGAGGATTGA-ATATAT 57088 ||||| ||||||||||||||||||| ||| |||||| Sbjct 18446 GATACTTACCACTATACTACCGAGGACTGACATATAT 18482 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 3030 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 3089 Query 57065 TATACTACCGAGGATTG 57081 |||||||||||||| || Sbjct 3090 TATACTACCGAGGACTG 3106 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1085 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 1144 Query 57065 TATACTACCGAGGATTG 57081 |||||||| ||||| || Sbjct 1145 TATACTACAGAGGACTG 1161 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| ||| |||| |||||||||||| ||| ||||||| Sbjct 62 TTCTCCCCGGCGGGTAATCGAACCCCGGTTTCCCTCGTGACAGGCGGGGATATTCACCAC 121 Query 57065 TATACTACCGAGGATTGAATATATAACTTG 57094 |||||||||||||| || || ||| ||| Sbjct 122 TATACTACCGAGGACTGGTAATTTAAATTG 151 >seq77675 Length=3689 Score = 104 bits (114), Expect = 3e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 3287 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 3346 Query 57065 TATACTACCGAGGATTGAATATATAACTTG 57094 |||||||||||||| || || ||| ||| Sbjct 3347 TATACTACCGAGGACTGGTAATTTAAATTG 3376 >seq1598 Length=271001 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 128008 TTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 127949 Query 57064 CTATACTACCGAGGATT 57080 ||||||||||||||||| Sbjct 127948 CTATACTACCGAGGATT 127932 >seq887 Length=403026 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 337300 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 337241 Query 57066 ATACTACCGAGGATTGAATATATAA 57090 ||||||||||| |||||||||| Sbjct 337240 ATACTACCGAG----GAATATATAA 337220 >seq80409 Length=1700 Score = 102 bits (112), Expect = 9e-17 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 56997 GAAAAATTT---TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||||||| | ||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 1327 GAAAAATATAACTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1268 Query 57054 ATACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||||||| Sbjct 1267 ATACTCACCACTATACTACCGAGGA 1243 >seq4682 Length=86729 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 79778 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 79837 Query 57065 TATACTACCGAGGATT 57080 |||||||||||||||| Sbjct 79838 TATACTACCGAGGATT 79853 >seq196739 Length=503 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 || || |||| |||| | |||| |||||||||||||||||||| |||||| ||||||| Sbjct 472 AACTTACTCCCCGGCGGGGAATCTAACCCTGGTCTCCCGCGTGATAGGCGGGGATACTCA 413 Query 57061 CCACTATACTACCGAGGATT 57080 |||||||||||||||||||| Sbjct 412 CCACTATACTACCGAGGATT 393 >seq3701 Length=112886 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 || || |||| |||| | |||||||||| ||||| ||||||||||||||| ||||||| Sbjct 410 AACTTACTCCCCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGGGATACTCA 351 Query 57061 CCACTATACTACCGAGGATT 57080 |||||||||||||||||||| Sbjct 350 CCACTATACTACCGAGGATT 331 >seq647 Length=489208 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTT-CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 || ||||| |||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 135680 AATAATTTCACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 135621 Query 57057 CTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||| Sbjct 135620 CTCACCACTATACTACCGAGGA 135599 >seq524 Length=543868 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 204761 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 204702 Query 57065 TATACTACCGAGGAT 57079 ||||||||||||||| Sbjct 204701 TATACTACCGAGGAT 204687 >seq1471 Length=275221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3486 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3427 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 3426 TACTACCGAGGATT 3413 >seq8129 Length=34426 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 8947 TTTCTCCCCGGCGGTGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 8888 Query 57064 CTATACTACCGAGGAT 57079 |||||||||||||||| Sbjct 8887 CTATACTACCGAGGAT 8872 >seq256919 Length=264 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| |||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 204 AATCGAACCCAGGTCTCCCGCGTGACAGGTGGGGATACTCACCACTATACTACCGAGGAT 145 Query 57080 T 57080 | Sbjct 144 T 144 >seq100255 Length=840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 57008 TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 57067 ||| |||| | ||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 840 TCCCCGGCGGGGAATCGAACCGCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTAT 781 Query 57068 ACTACCGAGGA 57078 ||||| ||||| Sbjct 780 ACTACAGAGGA 770 >seq14773 Length=6164 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 57018 GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGG 57077 |||||| ||| | ||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 326 GAAATCAAACGCCGGTCTCCCGCGTGACGGGCGGGGATACTCACCACTATACTACCGAGG 267 Query 57078 ATT 57080 ||| Sbjct 266 ATT 264 >seq1267 Length=316221 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | | || ||| || || | ||| ||| ||||||||||||||||||| Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| | | || || | |||||| || || || || | | |||||||| | || Sbjct 206035 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGG 206094 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| || ||| |||||| || | | | | ||||| || | ||| || Sbjct 206095 ATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACT 206154 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 206155 TCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 >seq263599 Length=240 Score = 82.4 bits (90), Expect = 8e-11 Identities = 53/57 (93%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 57024 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATT 57080 |||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||| Sbjct 214 GAACCCCGGTCTCC-GCGTGACAGGCGGAAATACTCACCACTATACTACCGACGATT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541265429643120