Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1156 136 4e-27 seq1267 131 2e-25 seq4435 122 9e-23 seq629 116 4e-21 seq994 82.4 8e-11 >seq1156 Length=327524 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || ||||| ||||| |||||||||| | || | | ||| Sbjct 17703 AGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATCT 17644 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || | | ||| || || || |||||||||||||| ||| Sbjct 17643 TCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATCT 17584 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || |||||| ||||||| ||| | || |||| | || ||||||| || | ||| Sbjct 17583 TGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGTC 17524 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || ||||| |||||||| || || |||||||| Sbjct 17523 TTTCCTGTCAAGGTTTTTACAAAGATCTGCATTTT 17489 >seq1267 Length=316221 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||||| |||| || || ||||||||||| |||||||| | | || | | Sbjct 206215 CTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCA 206274 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | |||||| || ||| |||| | || ||||||||| ||||| ||||||||||| Sbjct 206275 TCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCTTTG 206334 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| ||| || | ||| |||| || || ||||||| || | | Sbjct 206335 TCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTAATG 206394 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| | ||||| || || || ||||| Sbjct 206395 GTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||||||||||| || ||||||||||||||||| || |||| Sbjct 206431 CCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGAC 206490 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || | ||| || || ||| |||| | | ||| ||||| || ||| Sbjct 206491 AATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGA 206550 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| ||||| ||| ||| || | || |||| | |||||| Sbjct 206551 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACT 206610 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | || || || || | |||||||| || || ||||| Sbjct 206611 TCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||||| |||| || || ||||||||||| |||||||| | | || | | Sbjct 205987 CTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCA 206046 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | |||||| || ||| |||| | || |||||||| ||||| || || ||||| Sbjct 206047 TCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGGATCCCCTCTTTA 206106 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || ||||| |||||| || | || |||| | || ||||| | || | Sbjct 206107 TCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTGATA 206166 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || |||| ||| || || || || ||||| Sbjct 206167 GTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 >seq4435 Length=89394 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| ||| || || | |||| || |||||||| |||||||||||||||| Sbjct 36727 CCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGAC 36668 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | | ||||| | ||||| || ||| |||| | || || ||||| ||||| Sbjct 36667 AGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGG 36608 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || ||||| || || ||||| ||| || | |||||||| || || || Sbjct 36607 ATTCCCTCCTTATCTTGAATCTTA-GCTTTCACATTTTCGATTGTATCACTGGGTTCTAC 36549 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||| || || |||| ||| || || |||||||||||| Sbjct 36548 CTCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || |||| |||| || || ||||| || ||||| ||||||| | || | | | Sbjct 36487 CTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGACAGAGTTCTCCCA 36428 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | ||| || || ||| | || | || ||| ||||| || |||||||||||||| Sbjct 36427 TCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCTTTA 36368 Query 64349 TCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || | |||||||||| ||| || | || |||| || || ||||| | |||| Sbjct 36367 TCCTGGA-TTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGTTAT 36309 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| || | |||||| ||||| || ||||| Sbjct 36308 AGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| ||||| || | |||| || || || || ||||| || ||||||| Sbjct 36271 CCACCACGCAACCTAAGTACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTGAT 36212 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | ||||| | ||| || || ||| |||| | | || || || || ||| Sbjct 36211 AAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGA 36152 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| ||||| |||||| || | ||||||| || || ||| Sbjct 36151 ATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTTCAACT 36092 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | || || || || | ||||| || || |||||||| Sbjct 36091 TCCAGAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||| || ||||||| | ||||||| | ||||| | || || || ||| |||| Sbjct 32842 TTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATC 32783 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 | | || || || || |||||||||||||| || || | |||||||||| || || Sbjct 32782 AATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGA-TTTTTGCTTTCACGTTTTC 32724 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||||| || || ||||| | |||| |||||||| || | |||||| ||||| Sbjct 32723 AATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAA 32664 Query 64435 AATTTGCAT 64443 || ||||| Sbjct 32663 GATCTGCAT 32655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| || || ||||| | || || || || ||||| |||||||||| Sbjct 36043 CCACCACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGAC 35984 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | ||||| | |||||| || ||| | || | | || || || || ||| Sbjct 35983 AAGGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 35924 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || ||||| ||||| ||||| || ||| | || || | | || || Sbjct 35923 ATTCCCTCCTTATCTTGGATTTTA-GCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTAC 35865 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 || | ||| | |||||||| || | || ||||| || || ||||||||||| Sbjct 35864 CTCCAAAGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCATTTTAAT 35811 >seq629 Length=499154 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| ||| | || ||||| | || || || ||||||||||||||||||| | Sbjct 6192 CCACCACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAG 6133 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || || || || || ||| | || || | ||| ||||| || || Sbjct 6132 AGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGG 6073 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || ||| |||||| ||| | ||| |||| | |||||| Sbjct 6072 ATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACT 6013 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||| || || || | || || || ||||||||||| Sbjct 6012 TCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || ||||||||||| |||||||| || | | || || | || || Sbjct 5946 ACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTCC 5887 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || || || ||| | || || | ||| ||||| || || || ||||| || ||||| Sbjct 5886 AGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 5827 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||| |||||| ||| | ||| |||| | |||||||| | ||| | ||| || Sbjct 5826 ATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTT 5767 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || || || ||||||||||| Sbjct 5766 CCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 >seq994 Length=361151 Score = 82.4 bits (90), Expect = 8e-11 Identities = 110/151 (73%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 34436 TACGAACCGGGCAAACGTCGTTGGCTTAAAATTAAAAAAGACTATCTATGTAACGGCGAA 34495 || || || || ||||| | |||||| |||||||||||||| || ||| | || | | Sbjct 158601 TATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGATTACCTAGAAGATGGAGCA 158542 Query 34496 ATGGCGGATTCGATTGATTTAGTCGTGCTGGGCGCTCAGATGGGTACTGGGAAAAAAGGA 34555 ||||| ||||| |||| | || || || || || | | || ||||| || ||||| Sbjct 158541 ATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTTTGGAACTGGAAATAAAGGT 158482 Query 34556 GGTCAAT--TGTCGATATTTTTGATGGGATG 34584 || ||| |||| |||||| |||||||||| Sbjct 158481 GG--AATGATGTCAATATTTCTGATGGGATG 158453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497853617110920