Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4435 141 7e-29 seq1267 132 3e-26 seq629 132 3e-26 seq1156 125 5e-24 seq5467 107 1e-18 >seq4435 Length=89394 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 ||| || |||| ||| | || || |||||||| || ||||| || ||||||||||| Sbjct 36728 GCCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGA 36669 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || |||| | ||||| ||||| || ||||| | || || | |||||||| || Sbjct 36668 CAGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGG 36609 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| ||||| || ||| || ||| ||| |||| || ||||| || |||||| Sbjct 36608 GATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTAC 36549 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| |||||||| ||||||||||| || |||||||||||||| Sbjct 36548 CTCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCAT 36501 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||| ||||| ||||| ||||| || ||||| ||||| ||| ||||| | |||||| Sbjct 36481 ACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGACAGAGTTCTCCCATCTTCT 36422 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || ||||| || || | || || | ||||||||| |||||||||||| || || Sbjct 36421 AACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCTTTATCCTGG 36362 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||| ||| |||| ||||| || || ||| || || | ||| || || || Sbjct 36361 ATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGTTATAGTCTTG 36302 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||| || || || ||||| Sbjct 36301 CCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| ||||| || | || || ||||| || || || || || || || ||||| Sbjct 36273 TGCCACCACGCAACCTAAGTACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATC-- 36216 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 ||| || || | ||||| || ||||| || || | ||||| | ||||| || Sbjct 36215 TGATAAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGG 36156 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||||||||| || || ||||||| ||||||| |||| |||||||| || ||| Sbjct 36155 TGGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTTC 36096 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 36095 AACTTCCAGAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 |||||||||||||| || || | ||||| | ||||| || |||||||||||| || Sbjct 32809 TCTTCTAATTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTA 32750 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||| ||| || |||| |||||||| || ||| || || | ||| || Sbjct 32749 TCCTGGATTTTTGCTTTCACGTTTTCAATAGTATCACTGGGTTCAACTTCGAGGGTTATA 32690 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| |||||||| || || || ||||| Sbjct 32689 GTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 32655 >seq1267 Length=316221 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||||||| || ||||| || ||||| || || || |||||||| ||||| || Sbjct 205747 CCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATC--TG 205804 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | || || | ||| |||||||| | || || | ||| ||||| | Sbjct 205805 ACAAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAG 205864 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || || || || |||||| || ||| |||| ||||| || || ||| | Sbjct 205865 GGATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAA 205924 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| |||||||||||||||||||| || ||||| |||||||| Sbjct 205925 CTTCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 Score = 127 bits (140), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || || | ||| || |||| |||||| ||||| |||||||| ||||| || || Sbjct 206429 TGCCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTC-- 206486 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 ||| ||| || | || || || ||||| ||||| | || || | ||||||||| Sbjct 206487 TGACAATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGG 206546 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||||||||| ||||| ||||||| || ||| |||| || || || ||| || Sbjct 206547 GGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTC 206606 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || || ||||| ||||| || ||||||||||| || ||||| Sbjct 206607 CACTTCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||| ||||| || || |||||||| || |||||||| | | |||| | ||||| Sbjct 206221 ACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATCTTCC 206280 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || || || | ||||| | ||| ||||| || |||||||| ||||| Sbjct 206281 AACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGG 206340 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| |||| || || || || ||| || |||| |||||||||||| Sbjct 206341 ATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTAATGGTTTTG 206400 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| || ||||| Sbjct 206401 CCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||| ||||| || || |||||||| || |||||||| | | |||| | ||||| Sbjct 205993 ACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATCTTCC 206052 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || || || | ||||| | || ||||| || || || || || || Sbjct 206053 AACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGGATCCCCTCTTTATCCTGG 206112 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||||| |||| ||||| || || ||| || || | ||| || |||||| Sbjct 206113 ATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTGATAGTTTTA 206172 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||||| || ||||| || ||||| Sbjct 206173 CCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 >seq629 Length=499154 Score = 132 bits (146), Expect = 3e-26 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| |||||| || | ||| | ||||| || ||||| ||||||||||| || Sbjct 6192 CCACCACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATC--TG 6135 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | || | || |||| |||||| ||||| | |||| | ||||||||| || Sbjct 6134 AGAGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTG 6075 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || ||||||||||| || ||||||||| ||| | ||||| || || || || Sbjct 6074 GGATGCCTTCCTTGTCTTGGATCTTTGCTTTT-ACATTCTCTATTGTGTCACTTGGCTCC 6016 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || |||||||| || || || || || |||||||||||||| Sbjct 6015 ACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| |||||||| |||||||| |||||||| || || ||| | || || Sbjct 5947 AACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTC 5888 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | |||| | ||||||||| ||| || ||||||||||| Sbjct 5887 CAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTG 5828 Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || ||||||||| ||| | ||||| || || || || || || || || ||||||| Sbjct 5827 GATCTTTGCTTTT-ACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTT 5769 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || || || |||||||||||||| Sbjct 5768 TTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 >seq1156 Length=327524 Score = 125 bits (138), Expect = 5e-24 Identities = 169/234 (72%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | || ||| | |||||| || || ||||| || || |||||||| Sbjct 17718 CCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGAT 17659 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||||| || || || || |||| || | |||||| || ||| Sbjct 17658 AGTGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGA 17599 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||||| |||||| | || ||||| || ||| ||||| Sbjct 17598 ATTCCTTCTTTATCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACT 17539 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15183 ||||||||||| || || ||||||| ||||||||||| || ||||| |||||| Sbjct 17538 TCTAAGGTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCAT-TTTGAA 17486 >seq5467 Length=66102 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | ||| | |||||| || || || ||||| || ||||| || Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | |||||| || || | || | | || ||||| |||| Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| ||||||| | || |||||||| ||| |||||| Sbjct 29941 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACT 30000 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||||||||| || || || ||||| ||||| || ||||| Sbjct 30001 TCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356142811428005