Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1267 116 4e-21 seq4435 113 4e-20 seq1156 95.1 1e-14 >seq1267 Length=316221 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | || |||||| | ||| | ||||| ||||||||||| || || || | Sbjct 206431 CCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGAC 206490 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | |||||||||||| | || |||| ||| || || || || Sbjct 206491 AATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGA 206550 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||||| ||||| | ||| | |||||| || ||| ||| Sbjct 206551 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACT 206610 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || || ||||||||||| |||||||| Sbjct 206611 TCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 || ||| || || | || ||||||||||||||||||||||| | || | ||| Sbjct 205989 CAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATC 206048 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || | ||| ||||| || | ||||| | ||||| || ||||| || ||||| || || Sbjct 206049 TTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGGATCCCCTCTTTATC 206108 Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 | |||||| ||| | | ||| | ||||| | || ||||| | ||| | || Sbjct 206109 CTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTGATAGT 206168 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| || |||||||| || ||||| ||||||||| || Sbjct 206169 TTTACCTGTCAGAGTCTTAACAAAGATCTGCATGCCT 206205 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 || ||| || || | || ||||||||||||||||||||||| | || | ||| Sbjct 206217 CAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATC 206276 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || | ||| ||||| || | ||||| | |||||| || ||||| || || || ||||| Sbjct 206277 TTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTC 206336 Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 ||| || ||| | | ||| | ||||| | || ||||| | ||| | || Sbjct 206337 TTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTAATGGT 206396 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||||||| || ||||| ||||| ||||||||| Sbjct 206397 TTTGCCGGTAAGGGTTTTCACAAAGATCTGCATG 206430 >seq4435 Length=89394 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || |||| ||||| |||||||| || |||||||||||||| | Sbjct 36043 CCACCACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGAC 35984 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||| |||||||| |||| |||| || ||||| || || Sbjct 35983 AAGGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 35924 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| || |||||| |||| | || | |||||| || ||| || Sbjct 35923 ATTCCCTCCTTATCTTGGATTTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACC 35864 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || || || |||||||| |||||||| Sbjct 35863 TCCAAAGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCAT 35817 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| || || || ||||| || || | ||| |||| ||||||||| Sbjct 36469 GTAGACTCTTTCTGGATGTTATAATCTGACAGAGTTCTCCCATCTTCTAACTGTTTTCCT 36410 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || |||| || | ||| || || || || || || || || ||| |||||| ||| || Sbjct 36409 GCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCTTTATCCTGGATTTT-TGCTTT 36351 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | ||||| | || ||||||| ||| | || ||||| || ||||| Sbjct 36350 CACATTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGT 36291 Query 127096 TTTTACAAAAATCTGCATG 127114 ||| || || ||||||||| Sbjct 36290 TTTGACGAAGATCTGCATG 36272 >seq1156 Length=327524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | || | ||| | || |||||||| |||||||||||||| Sbjct 17718 CCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGAT 17659 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| |||||||| ||||| || | || |||| ||| ||||| || || Sbjct 17658 AGTGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGA 17599 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || |||||| ||| | | || | ||||| || ||| ||| Sbjct 17598 ATTCCTTCTTTATCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACT 17539 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || |||| ||||||||||| |||||||| Sbjct 17538 TCTAAGGTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCAT 17492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473796171238320