Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1267 154 1e-32 seq5467 129 5e-25 seq4435 116 3e-21 seq629 102 7e-17 seq1632 84.2 2e-11 seq1156 84.2 2e-11 >seq1267 Length=316221 Score = 154 bits (170), Expect = 1e-32 Identities = 175/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| |||||||||||||| || || ||||| ||||| || ||||| || Sbjct 206428 ATGCCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTC- 206486 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| | | || ||| ||||| |||||||| || | || |||| || ||||| | Sbjct 206487 -TGACAATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTG 206545 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| |||||||| ||||||||||| |||| ||| | |||||| || || Sbjct 206546 GGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCT 206605 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| ||||| | ||||| || ||||| ||||||||||| || |||||| Sbjct 206606 CCACTTCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCATC 206658 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||||| ||||| || || ||||| || ||||| ||||| ||||| Sbjct 206200 ATGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCA 206259 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || |||||||| | ||||| | |||||||| || Sbjct 206260 GATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGA 206319 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| || || || | ||| | ||||| | || Sbjct 206320 GGGATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCA 206379 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||||||||| || ||||| ||||| || ||||| Sbjct 206380 ACTTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 >seq5467 Length=66102 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || |||||||||||||||||||| || || | ||| ||| ||| Sbjct 29839 ACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAAAGGGTCCGTCCATCCTCC 29898 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||| ||||| | || | || ||||||||| || ||||| |||||||| |||||| Sbjct 29899 AGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGAATACCTTCTTTGTCTTGA 29958 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| ||| | || | || || || || ||||| ||||||| |||||| Sbjct 29959 ATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACTTCCAGAGTAATGGTTTTG 30018 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| ||||| || ||||| Sbjct 30019 CCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 45106 ATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165 ||||| |||| || || || || | || ||||||| || ||||| || || ||||||| Sbjct 29585 ATTTTGTTCCACCACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTAT 29644 Query 45166 AATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGT 45225 |||| | ||| ||| |||| ||||| ||||| | |||| || || |||| Sbjct 29645 AATCAGAAAGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGT 29704 Query 45226 CCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAG 45285 | || |||||||||||||| ||||| || ||| ||| | || | ||||| | Sbjct 29705 CAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTCTCAATTGTGTCACTTG 29764 Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| | ||||| || || || || || |||||||| |||||| Sbjct 29765 GTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTGACAAAAATCTGCATC 29820 >seq4435 Length=89394 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| || ||||||||||| | ||| | ||| ||||| ||| Sbjct 36247 TGAAGTGTGGACTCCTTCTGAATATTATAATCTGATAAGGTGCGACCATCTTCCAACTGT 36188 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||||| ||| || || || ||||| |||||||||||||||||||| Sbjct 36187 TTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTG 36128 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | || || | || ||||| ||||||| ||||| || || Sbjct 36127 GCTTTTACATTTTCAATAGTATCACTGGGTTCAACTTCCAGAGTAATTGTTTTTCCAGTA 36068 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| ||||||||| Sbjct 36067 AGTGTTTTAACAAAGATTTGCATC 36044 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | |||||||| |||| || || || || || || ||||| |||||||| Sbjct 36502 ATTCCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATC- 36444 Query 45171 CTGACGG--TTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| | || | ||| || || ||||||||||| | || || | || ||||| | Sbjct 36443 -TGACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTG 36385 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| ||||||||||| || |||||| ||| | ||| | ||||| | | Sbjct 36384 GTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTT 36325 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| || | || ||||| || |||||||| || || || ||||| Sbjct 36324 CAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATA 45210 |||| || ||||||||||| | ||| ||| || |||||||| ||||| | | Sbjct 32844 CCTTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAA 32785 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270 |||||| ||| || || || ||||| ||||||||||| || |||||| ||| | || Sbjct 32784 TCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTT 32725 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | || || | || |||||||| || | || ||||| || |||||||| || | Sbjct 32724 CAATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGA 32665 Query 45331 AAATTTGCAT 45340 | || ||||| Sbjct 32664 AGATCTGCAT 32655 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 45109 TTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATA 45166 ||||| ||||| || || |||| || | || || |||||||| || || || || || Sbjct 36734 TTATTGGCCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTA 36675 Query 45167 ATCGCTGAC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 ||| |||| |||| | ||| |||||||| || || || | || || | ||| ||| Sbjct 36674 ATC--TGACAGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGG 36617 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAA 45284 || || || || || || ||||||||||| || ||| | ||| | || || Sbjct 36616 TCTGGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTG 36557 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || | ||||| || || ||||| || |||||||||||||| Sbjct 36556 GGTTCTACCTCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCAT 36501 >seq629 Length=499154 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| || ||||| || || ||||| |||||||| || || || Sbjct 5967 ATCCCTCCCCTCAGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCA 5908 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || || || ||| |||| |||||| || || | |||| || || ||||| | Sbjct 5907 --GAAAGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAG 5850 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || |||||||| || ||||| || ||| ||| | |||| ||||| | || Sbjct 5849 GTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCT 5790 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||| | ||||| || || || || || |||||||||||||| Sbjct 5789 CCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 45104 TTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163 ||| ||| ||| || || || || || || ||||||| || || |||||||| || || Sbjct 6202 TTAATTTGATCCACCACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTT 6143 Query 45164 ATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 ||||| ||| || | | ||| || | |||||| || || | |||| || || Sbjct 6142 GTAATC--TGAGAGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGT 6085 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 ||||| || || |||||||| || ||||| || ||| ||| | |||| ||||| Sbjct 6084 TGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCA 6025 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||| ||||| | ||| | ||||| || || || || || ||||||||||||||| Sbjct 6024 CTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATC 5965 >seq1632 Length=265768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||| | ||| | || || ||||| || || || ||||||||||||||||| ||||| ||| Sbjct 23503 ATTTTAGAAGCTCAGGTTGAAACTGGGACACCATACATGCTCTACAAAGATGCCTGTAAC 23444 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 || || | || ||| ||| | ||||| || ||||||||||| | || | || ||| Sbjct 23443 AGAAAGTCAAACCAGCAGAACCTTGGAACCATCAAATGTAGTAACTTATGTACAGAGATT 23384 Query 123708 ATCGAATACAG 123718 | || ||||| Sbjct 23383 GTAGAGTACAG 23373 >seq1156 Length=327524 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || || || || ||||| ||||| | ||| | ||| || Sbjct 17700 ACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATCTTCT 17641 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || |||||||| |||| |||| || || || || ||||| |||||||||||||| Sbjct 17640 AGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 17581 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| || | || | ||||| || ||| ||||| | |||| || || Sbjct 17580 ATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGTCTTT 17521 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||||||||| || ||||| Sbjct 17520 CCTGTCAAGGTTTTTACAAAGATCTGCAT 17492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450382808078280