Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1267 127 5e-24
seq4435 111 4e-19
seq5467 109 1e-18
seq629 105 2e-17
seq2201 100 7e-16
seq1156 89.7 1e-12
>seq1267
Length=316221
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||| || | |||||| ||||||||||| || | ||| || || | ||| || |||||
Sbjct 205758 TCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGACAAGGTTCTTCC 205817
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||| ||||| ||||| || || || || | | ||||||||| ||| || || |||
Sbjct 205818 ATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCCCTCTTT 205877
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
|||||||| || |||||| ||| | ||||| ||| ||| || |||| |||||
Sbjct 205878 ATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTGAT 205937
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| || ||||| || ||||| |||||
Sbjct 205938 GGTTTTACCTGTCAGAGTCTTAACAAAGATTTG 205970
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471
|| ||||| || | ||| || || ||||| ||||| | ||||| |||| ||||| |||
Sbjct 205984 AGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTT 206043
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531
|||||||||| ||||||||| || || || | | |||||||| ||| || || |||
Sbjct 206044 CCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGGATCCCCTCT 206103
Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591
||||| || || ||| ||| ||| | ||||| ||| ||| || |||| |||
Sbjct 206104 TTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTG 206163
Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || ||||| || ||||| || ||
Sbjct 206164 ATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTG 206198
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471
|| ||||| || | ||| || || ||||| ||||| | ||||| |||| ||||| |||
Sbjct 206212 AGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTT 206271
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531
|||||||||| ||||||||| || || || | | ||||||||| ||| |||||||||
Sbjct 206272 CCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCT 206331
Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591
|| || ||||| |||||| ||| | ||||| | | ||| || || | ||
Sbjct 206332 TTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTA 206391
Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || ||||||||||| || ||
Sbjct 206392 ATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTG 206426
>seq4435
Length=89394
Score = 111 bits (122), Expect = 4e-19
Identities = 164/229 (72%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||||||| || || || | ||| |||||||| || | ||||| || | ||| ||
Sbjct 36037 CGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGTA 35978
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||| ||||||||| || ||||| | | || || || || ||||||
Sbjct 35977 CGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCCC 35918
Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| || || || ||| || || ||| || | |||||| | | ||||| |||||
Sbjct 35917 TCCTTATCTTGGAT-TTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACCTCCAA 35859
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTA 199636
||||| ||||| || || || || || ||||| || || |||||||
Sbjct 35858 AGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTG---CATTTTA 35813
Score = 100 bits (110), Expect = 7e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| |||||||| || | ||| || || || || || || | |||||| || | || ||
Sbjct 36721 CGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTT 36662
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
||||||||||||| ||||| || || || || | | || ||||| ||| |||||
Sbjct 36661 CTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCC 36602
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || |||||||| ||||| ||||| || || | | |||||| || |
Sbjct 36601 TCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACCTCAAGG 36542
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || ||||| || |||||||||||
Sbjct 36541 GTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTG 36504
Score = 95.1 bits (104), Expect = 3e-14
Identities = 81/100 (81%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989
||| | | ||||| || ||||||||||||||||||||| | || ||| | ||||||||
Sbjct 35938 AAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAGATTACAATA 35997
Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
| ||||| ||||||||| | || || ||| ||||||||||
Sbjct 35998 TTCAGAAGGAGTCTACTTTACATCTGGTTCTGAGACTTCG 36037
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||| || ||||| ||||| |||||||| || ||| || | ||||| ||| ||||||||
Sbjct 36402 ATCTTTGCAGGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAACATCCAGAAA 36461
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACT 201026
|||||||| |||||| | || |||| ||
Sbjct 36462 GAGTCTACACTTCACTTAGTCCTGAGGCT 36490
>seq5467
Length=66102
Score = 109 bits (120), Expect = 1e-18
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
|| ||| || || || ||||| || |||||||||| |||||||||| | |||| |||
Sbjct 29832 TCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAAAGGGTCCGTCC 29891
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||| ||||| || || || || || ||||| | |||||||| || ||| ||||||
Sbjct 29892 ATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGAATACCTTCTTT 29951
Query 199534 CTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592
|| ||||| |||||||| || || | || || | | |||||| |||| || |
Sbjct 29952 GTCTTGAAT-TTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACTTCCAGAGTAA 30010
Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
| || || || || || ||||||||||| || ||
Sbjct 30011 TGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTG 30044
>seq629
Length=499154
Score = 105 bits (116), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| ||||| | |||||| || | ||| ||||||||||| | |||||| || | | ||
Sbjct 6186 CGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGTA 6127
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||| || || || || || || ||||| || | ||| ||||| || || |||
Sbjct 6126 CGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCT 6067
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || |||||| || || || | ||||| ||| || || |||||
Sbjct 6066 TCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAA 6007
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || ||||| || ||||||||||||||
Sbjct 6006 GTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTG 5969
Score = 100 bits (110), Expect = 7e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471
|| ||| | || || || || || || || ||||||| ||||||||||| | || |
Sbjct 5955 AGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGA 5896
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531
||||| ||||| || || || || ||||| || | ||| ||||| || || |||||
Sbjct 5895 CCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCC 5836
Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591
|| || |||||| || || || | ||||| ||| || || ||||| |||
Sbjct 5835 TTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTG 5776
Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || ||||| || ||||||||||||||
Sbjct 5775 ATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTG 5741
>seq2201
Length=213340
Score = 100 bits (110), Expect = 7e-16
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||| || || | ||| ||||| || ||||| |||| |||||| |||| || ||| | ||
Sbjct 161602 TCTTAGAACTAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGACAGAGTTCGGCC 161543
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|||||||||||||||||| || ||||| || | ||||||||| ||| ||| |||
Sbjct 161542 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATACCT 161488
Score = 87.8 bits (96), Expect = 4e-12
Identities = 74/91 (81%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993
||| ||||| || ||||||||| |||||||||| | ||| || | ||||||||| ||||
Sbjct 161512 ACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACTCTGTCTGATTACAACATCCA 161571
Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGA 201024
||| || |||||||||||| | ||| | |||
Sbjct 161572 GAAGGAATCTACTCTTCACTTAGTTCTAAGA 161602
>seq1156
Length=327524
Score = 89.7 bits (98), Expect = 1e-12
Identities = 151/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| ||||| || ||||| ||||| || || | ||||| || | | || |||||||||
Sbjct 17703 AGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATCT 17644
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||| || || || | | ||| || || || |||||||||| ||
Sbjct 17643 TCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATCT 17584
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| || ||| ||| || || | ||||| | | ||||| || || || || |||
Sbjct 17583 TGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGTC 17524
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || || | ||||| ||||| || || ||||||
Sbjct 17523 TTTCCTGTCAAGGTTTTTACAAAGATCTG---CATTTT 17489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1174589610950131
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |