Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1267 127 5e-24 seq4435 111 4e-19 seq5467 109 1e-18 seq629 105 2e-17 seq2201 100 7e-16 seq1156 89.7 1e-12 >seq1267 Length=316221 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | |||||| ||||||||||| || | ||| || || | ||| || ||||| Sbjct 205758 TCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGACAAGGTTCTTCC 205817 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| ||||| ||||| || || || || | | ||||||||| ||| || || ||| Sbjct 205818 ATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCCCTCTTT 205877 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||||||| || |||||| ||| | ||||| ||| ||| || |||| ||||| Sbjct 205878 ATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTGAT 205937 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| || ||||| ||||| Sbjct 205938 GGTTTTACCTGTCAGAGTCTTAACAAAGATTTG 205970 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || ||||| || | ||| || || ||||| ||||| | ||||| |||| ||||| ||| Sbjct 205984 AGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTT 206043 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| ||||||||| || || || | | |||||||| ||| || || ||| Sbjct 206044 CCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGGATCCCCTCT 206103 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| || || ||| ||| ||| | ||||| ||| ||| || |||| ||| Sbjct 206104 TTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTG 206163 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || ||||| || || Sbjct 206164 ATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTG 206198 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || ||||| || | ||| || || ||||| ||||| | ||||| |||| ||||| ||| Sbjct 206212 AGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTT 206271 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| ||||||||| || || || | | ||||||||| ||| ||||||||| Sbjct 206272 CCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCT 206331 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || ||||| |||||| ||| | ||||| | | ||| || || | || Sbjct 206332 TTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTA 206391 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||||||||| || || Sbjct 206392 ATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTG 206426 >seq4435 Length=89394 Score = 111 bits (122), Expect = 4e-19 Identities = 164/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||||||| || || || | ||| |||||||| || | ||||| || | ||| || Sbjct 36037 CGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGTA 35978 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| ||||||||| || ||||| | | || || || || |||||| Sbjct 35977 CGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCCC 35918 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || || ||| || || ||| || | |||||| | | ||||| ||||| Sbjct 35917 TCCTTATCTTGGAT-TTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACCTCCAA 35859 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTA 199636 ||||| ||||| || || || || || ||||| || || ||||||| Sbjct 35858 AGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTG---CATTTTA 35813 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||||||| || | ||| || || || || || || | |||||| || | || || Sbjct 36721 CGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTT 36662 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||||| ||||| || || || || | | || ||||| ||| ||||| Sbjct 36661 CTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCC 36602 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||| ||||| || || | | |||||| || | Sbjct 36601 TCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACCTCAAGG 36542 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || ||||| || ||||||||||| Sbjct 36541 GTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTG 36504 Score = 95.1 bits (104), Expect = 3e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | | ||||| || ||||||||||||||||||||| | || ||| | |||||||| Sbjct 35938 AAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAGATTACAATA 35997 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 | ||||| ||||||||| | || || ||| |||||||||| Sbjct 35998 TTCAGAAGGAGTCTACTTTACATCTGGTTCTGAGACTTCG 36037 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || ||||| ||||| |||||||| || ||| || | ||||| ||| |||||||| Sbjct 36402 ATCTTTGCAGGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAACATCCAGAAA 36461 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACT 201026 |||||||| |||||| | || |||| || Sbjct 36462 GAGTCTACACTTCACTTAGTCCTGAGGCT 36490 >seq5467 Length=66102 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 || ||| || || || ||||| || |||||||||| |||||||||| | |||| ||| Sbjct 29832 TCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAAAGGGTCCGTCC 29891 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| ||||| || || || || || ||||| | |||||||| || ||| |||||| Sbjct 29892 ATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGAATACCTTCTTT 29951 Query 199534 CTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || ||||| |||||||| || || | || || | | |||||| |||| || | Sbjct 29952 GTCTTGAAT-TTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACTTCCAGAGTAA 30010 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || || || ||||||||||| || || Sbjct 30011 TGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTG 30044 >seq629 Length=499154 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||| | |||||| || | ||| ||||||||||| | |||||| || | | || Sbjct 6186 CGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGTA 6127 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || || || || || ||||| || | ||| ||||| || || ||| Sbjct 6126 CGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCT 6067 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || |||||| || || || | ||||| ||| || || ||||| Sbjct 6066 TCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAA 6007 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || |||||||||||||| Sbjct 6006 GTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTG 5969 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || ||| | || || || || || || || ||||||| ||||||||||| | || | Sbjct 5955 AGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGA 5896 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| ||||| || || || || ||||| || | ||| ||||| || || ||||| Sbjct 5895 CCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCC 5836 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || |||||| || || || | ||||| ||| || || ||||| ||| Sbjct 5835 TTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTG 5776 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| || |||||||||||||| Sbjct 5775 ATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTG 5741 >seq2201 Length=213340 Score = 100 bits (110), Expect = 7e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||| ||||| || ||||| |||| |||||| |||| || ||| | || Sbjct 161602 TCTTAGAACTAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGACAGAGTTCGGCC 161543 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||||||||||| || ||||| || | ||||||||| ||| ||| ||| Sbjct 161542 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATACCT 161488 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||| || ||||||||| |||||||||| | ||| || | ||||||||| |||| Sbjct 161512 ACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACTCTGTCTGATTACAACATCCA 161571 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGA 201024 ||| || |||||||||||| | ||| | ||| Sbjct 161572 GAAGGAATCTACTCTTCACTTAGTTCTAAGA 161602 >seq1156 Length=327524 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||| ||||| || || | ||||| || | | || ||||||||| Sbjct 17703 AGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATCT 17644 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || || || | | ||| || || || |||||||||| || Sbjct 17643 TCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATCT 17584 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || ||| ||| || || | ||||| | | ||||| || || || || ||| Sbjct 17583 TGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGTC 17524 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || | ||||| ||||| || || |||||| Sbjct 17523 TTTCCTGTCAAGGTTTTTACAAAGATCTG---CATTTT 17489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174589610950131