Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1267 98.7 1e-15 seq629 98.7 1e-15 seq5467 93.3 5e-14 >seq1267 Length=316221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | | || ||| | || | ||| ||| ||||| |||||||| || | Sbjct 205973 TGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAG 206032 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||| ||| | | || || | |||||| || || || ||||| | |||||||| | | Sbjct 206033 ATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAG 206092 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||| || ||| ||| || ||| | | | | ||||| || | ||| | Sbjct 206093 GGATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAA 206152 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| ||||| || ||||| || ||||||||||| ||||| Sbjct 206153 CTTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | | || ||| | || | ||| ||| ||||| |||||||| || | Sbjct 206201 TGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAG 206260 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||| ||| | | || || | |||||| || || || ||||| | ||||||||| | | Sbjct 206261 ATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAG 206320 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || ||||| |||||| ||| | | | | ||||| || | ||| | Sbjct 206321 GGATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAA 206380 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | || ||||||||||| || || ||||| |||||||| ||||| Sbjct 206381 CTTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 >seq629 Length=499154 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 46382 AACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCG 46441 || || |||||||| ||| ||||||||| || ||||| || || || || || | || Sbjct 6177 AAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGTACGTCCATCC 6118 Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || || || || || || || |||| | ||| ||||| | || | || |||||||| Sbjct 6117 TCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCT 6058 Query 46502 ATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 |||||| || | || | | ||||| || | ||||| |||| ||||||||| Sbjct 6057 TGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTT 5998 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| |||||||| Sbjct 5997 TTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | ||| || |||||||| |||||||| || || || || | || || Sbjct 5946 ACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTCC 5887 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || || || || || |||| | ||| ||||| | || | || |||||||| | Sbjct 5886 AGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 5827 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| || | || | | ||||| || | ||||| |||| ||||||||||| Sbjct 5826 ATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTT 5767 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || ||||| |||||||| Sbjct 5766 CCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 >seq5467 Length=66102 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || |||| |||||||| | || |||||||||||||||||||| || Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || || || || || || || || | | |||||||| | || Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTC-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | || |||| | ||| || | | || | || | | || || || | ||| || Sbjct 29941 ATACCTTCTTTGT-CTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTAC 29999 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||||||||| || || ||||| |||||||| ||||| Sbjct 30000 TTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563212069794360