Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq5467 95.1 8e-15 seq4435 89.7 4e-13 >seq5467 Length=66102 Score = 95.1 bits (104), Expect = 8e-15 Identities = 164/235 (70%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| ||| ||||| |||| ||| | ||| ||| ||||| ||||| || | Sbjct 29817 CATC-CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGT 29875 Query 39548 CGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 | | ||| | ||| |||| |||| |||||| || ||||||| | | ||||| || Sbjct 29876 CAG--AAAGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTC 29933 Query 39606 CGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCT 39665 | || | ||||||||||| |||||| ||| | || | | || || Sbjct 29934 TGGTGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGG 29993 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||| || |||| |||||| ||||| || |||| ||||| || |||||||||||| Sbjct 29994 TTCTACTTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCATG 30048 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCAT 39565 || || | ||||||||| |||||| || ||||||||||| | ||| | ||| ||| Sbjct 29608 AGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAG--AAAGGGTCCGTCCAT 29665 Query 39566 CGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGT 39625 | |||| ||||| || ||||||| | | ||| || || | || | ||||||||||| Sbjct 29666 CCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGT 29725 Query 39626 CGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 | || ||| ||| | || | | |||||| |||||| |||||||| || | Sbjct 29726 CTTGGATCTTTGCTTTTACATTCTCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAG 29785 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || | || || || || |||||||| Sbjct 29786 TTTTTCCAGTGAGGGTCTTGACAAAAATCTGCAT 29819 >seq4435 Length=89394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || ||||| | |||||||| || | ||| || || || ||||||||||| | Sbjct 36272 GCCACCACGCAACCTAAGTACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTGA 36213 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| ||||| |||||||| ||||||| || | || ||||| | || Sbjct 36212 TAAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGG 36153 Query 39612 TACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||||| || | || || | || || || || | | ||| | ||| Sbjct 36152 AATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCACTGGG--TTCA 36095 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| |||||||||||| || || | ||||| || ||||| ||||| Sbjct 36094 ACTTCCAGAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346155442619369