Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5467 116 4e-21 seq1267 105 7e-18 seq3845 104 2e-17 seq629 98.7 1e-15 seq6658 95.1 1e-14 seq4435 87.8 2e-12 seq10507 82.4 8e-11 >seq5467 Length=66102 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||||||||| || | || || || | | Sbjct 30047 ATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCTAGT 29988 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| |||||| | |||||||| || ||||| | ||||| Sbjct 29987 GATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAG 29928 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | ||||||| || || ||||| ||||| || | || ||||| |||||||| Sbjct 29927 CAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGACTACAAT 29868 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||| |||| ||||| |||||||| || Sbjct 29867 ATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGG 29821 >seq1267 Length=316221 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||||||||| || || ||||| ||||| | || || ||| | | Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||| | |||||||| ||||||||| | |||||| Sbjct 206597 GACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAA 206538 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | |||| || || |||||| |||| || | ||||| | ||||| ||| Sbjct 206537 CAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTATAAC 206478 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || ||||| ||| | || || ||| | ||| || Sbjct 206477 ATTCAAAAAGAATCTACTCTTCATCTAGTGTTG 206445 >seq3845 Length=110360 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 || |||||||| || || || || || || || || || || ||||| | ||| || Sbjct 71040 ACAAGATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATA 70981 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || || | || | || || || |||||| | | ||| |||||||| || || Sbjct 70980 AAGTGTTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACT 70921 Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATAT 133458 || || || ||||| || || ||||| ||||| || ||||| ||| ||||| | ||| Sbjct 70920 TCTTCTACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTAT 70861 Query 133459 TGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 | ||||||||||| ||||| | || || ||||| ||||||| ||||| Sbjct 70860 TCAATGGGAAAAATAACAAATCTCCGAGGATTTTCTCGCAACAAGGGCTC 70811 >seq629 Length=499154 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || ||||||||||| | || || ||| | | Sbjct 5738 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 5797 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||| |||| ||||| || || || || | |||||| Sbjct 5798 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 5857 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || || | || || ||||| ||||| || | || || || ||||||||| Sbjct 5858 CAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTGACTACAAC 5917 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || ||| |||| | | | |||| || || Sbjct 5918 ATCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAGGGGAGG 5964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || ||||||||||| | || || ||| | | Sbjct 5966 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 6025 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||| |||| ||||| || || || || | |||||| Sbjct 6026 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 6085 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || || | || || ||||| || || || | || || ||| || |||||| Sbjct 6086 CAGAGACTGATCTTTGCTGGTAAACAACTAGAGGATGGACGTACACTCTCAGATTACAAC 6145 Query 38424 ATCCAAAAGGAAGCGACGCTGCAT 38447 || |||||||| | || ||||| Sbjct 6146 ATTCAAAAGGAGTCTACTTTGCAT 6169 >seq6658 Length=47451 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| || |||||||| |||||||||||||| ||||| | || | || | Sbjct 24834 CCTCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCT 24893 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| || || | ||| || ||||||||||||| || || || || ||||| | Sbjct 24894 TTAACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGG 24953 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || || ||||| || | ||| | ||| | | |||||| ||| ||||| || | Sbjct 24954 CTACAAGTCGCTCAGGAAATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATCAG 25013 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 |||| | || || || || | ||||| || || || || Sbjct 25014 CCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAA 25053 >seq4435 Length=89394 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| ||||| ||||| ||||| || ||||| || ||||| | || || ||| | Sbjct 35814 AAAATGCAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGGTAGAGCCT 35873 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | |||| ||||||| || || ||||||||||| | || Sbjct 35874 AGCGACACCATAGAGAACG-TCAAAGCTAAAATCCAAGATAAGGAGGGAATTCCACCTGA 35932 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| | | || | || || || ||| |||| || | || ||| | || || Sbjct 35933 TCAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAGATTA 35992 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||| || || ||||| | || | ||| |||| ||| Sbjct 35993 CAATATTCAGAAGGAGTCTACTTTACATCTGGTTCTG 36029 >seq10507 Length=18653 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 65872 AATTGGCATCCTAAAACTATATTTATAAACGAATCCGGTTTGTATTCGTTAATTTTGAGA 65931 |||| ||||| | || |||||| |||| ||||| || || ||||| |||||| | | | Sbjct 12987 AATTTACATCCACATACAATATTTGTAAATGAATCTGGGTTATATTCATTAATTAT-ATA 13045 Query 65932 TCTAAAAA--ACCCGAAGCTCAACATTTTAAACATTGGGTCACATCAGAAGTGCTTCCTT 65989 | |||| | | | ||||| || | |||||| | ||| | ||||||||||| | || | Sbjct 13046 T-TAAACATTATCGGAAGCAAAAAAGTTTAAAAAATGGATACCATCAGAAGTGTTACCAT 13104 Query 65990 CAATTaaaaaaaCCGGAAAGTAT 66012 |||||| |||||| || || ||| Sbjct 13105 CAATTAGAAAAACTGGTAAATAT 13127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498379724277120