Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq5467 116 4e-21
seq1267 105 7e-18
seq3845 104 2e-17
seq629 98.7 1e-15
seq6658 95.1 1e-14
seq4435 87.8 2e-12
seq10507 82.4 8e-11
>seq5467
Length=66102
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| || || ||||||||||| || | || || || | |
Sbjct 30047 ATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCTAGT 29988
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | |||| |||||| | |||||||| || ||||| | |||||
Sbjct 29987 GATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAG 29928
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| | ||||||| || || ||||| ||||| || | || ||||| ||||||||
Sbjct 29927 CAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGACTACAAT 29868
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||||||| | || || ||| |||| ||||| |||||||| ||
Sbjct 29867 ATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGG 29821
>seq1267
Length=316221
Score = 105 bits (116), Expect = 7e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || ||||||||||| || || ||||| ||||| | || || ||| | |
Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | ||| | || | ||||| | |||||||| ||||||||| | ||||||
Sbjct 206597 GACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAA 206538
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| | | |||| || || |||||| |||| || | ||||| | ||||| |||
Sbjct 206537 CAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTATAAC 206478
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| ||||| ||| | || || ||| | ||| ||
Sbjct 206477 ATTCAAAAAGAATCTACTCTTCATCTAGTGTTG 206445
>seq3845
Length=110360
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338
|| |||||||| || || || || || || || || || || ||||| | ||| ||
Sbjct 71040 ACAAGATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATA 70981
Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398
|| || | || | || || || |||||| | | ||| |||||||| || ||
Sbjct 70980 AAGTGTTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACT 70921
Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATAT 133458
|| || || ||||| || || ||||| ||||| || ||||| ||| ||||| | |||
Sbjct 70920 TCTTCTACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTAT 70861
Query 133459 TGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508
| ||||||||||| ||||| | || || ||||| ||||||| |||||
Sbjct 70860 TCAATGGGAAAAATAACAAATCTCCGAGGATTTTCTCGCAACAAGGGCTC 70811
>seq629
Length=499154
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || ||||| || ||||||||||| | || || ||| | |
Sbjct 5738 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 5797
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| ||| |||| ||||| || || || || | ||||||
Sbjct 5798 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 5857
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| | || || | || || ||||| ||||| || | || || || |||||||||
Sbjct 5858 CAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTGACTACAAC 5917
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||| ||| | || || ||| |||| | | | |||| || ||
Sbjct 5918 ATCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAGGGGAGG 5964
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || ||||| || ||||||||||| | || || ||| | |
Sbjct 5966 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 6025
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| ||| |||| ||||| || || || || | ||||||
Sbjct 6026 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 6085
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| | || || | || || ||||| || || || | || || ||| || ||||||
Sbjct 6086 CAGAGACTGATCTTTGCTGGTAAACAACTAGAGGATGGACGTACACTCTCAGATTACAAC 6145
Query 38424 ATCCAAAAGGAAGCGACGCTGCAT 38447
|| |||||||| | || |||||
Sbjct 6146 ATTCAAAAGGAGTCTACTTTGCAT 6169
>seq6658
Length=47451
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
|||| || ||| || |||||||| |||||||||||||| ||||| | || | || |
Sbjct 24834 CCTCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCT 24893
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
| | ||| || || | ||| || ||||||||||||| || || || || ||||| |
Sbjct 24894 TTAACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGG 24953
Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096
| || || ||||| || | ||| | ||| | | |||||| ||| ||||| || |
Sbjct 24954 CTACAAGTCGCTCAGGAAATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATCAG 25013
Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136
|||| | || || || || | ||||| || || || ||
Sbjct 25014 CCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAA 25053
>seq4435
Length=89394
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| ||||| ||||| ||||| || ||||| || ||||| | || || ||| |
Sbjct 35814 AAAATGCAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGGTAGAGCCT 35873
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| ||||| | | | |||| | |||| ||||||| || || ||||||||||| | ||
Sbjct 35874 AGCGACACCATAGAGAACG-TCAAAGCTAAAATCCAAGATAAGGAGGGAATTCCACCTGA 35932
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||||| | | || | || || || ||| |||| || | || ||| | || ||
Sbjct 35933 TCAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAGATTA 35992
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
||| || || ||||| | || | ||| |||| |||
Sbjct 35993 CAATATTCAGAAGGAGTCTACTTTACATCTGGTTCTG 36029
>seq10507
Length=18653
Score = 82.4 bits (90), Expect = 8e-11
Identities = 106/143 (74%), Gaps = 4/143 (3%)
Strand=Plus/Plus
Query 65872 AATTGGCATCCTAAAACTATATTTATAAACGAATCCGGTTTGTATTCGTTAATTTTGAGA 65931
|||| ||||| | || |||||| |||| ||||| || || ||||| |||||| | | |
Sbjct 12987 AATTTACATCCACATACAATATTTGTAAATGAATCTGGGTTATATTCATTAATTAT-ATA 13045
Query 65932 TCTAAAAA--ACCCGAAGCTCAACATTTTAAACATTGGGTCACATCAGAAGTGCTTCCTT 65989
| |||| | | | ||||| || | |||||| | ||| | ||||||||||| | || |
Sbjct 13046 T-TAAACATTATCGGAAGCAAAAAAGTTTAAAAAATGGATACCATCAGAAGTGTTACCAT 13104
Query 65990 CAATTaaaaaaaCCGGAAAGTAT 66012
|||||| |||||| || || |||
Sbjct 13105 CAATTAGAAAAACTGGTAAATAT 13127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 498379724277120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |