Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1156 194 4e-44 seq4435 159 8e-34 seq1267 159 8e-34 seq5467 149 1e-30 >seq1156 Length=327524 Score = 194 bits (214), Expect = 4e-44 Identities = 170/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| ||||||||||||||||| |||||||||||||| | || ||||| |||||||| Sbjct 17701 AACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATCTTC 17642 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| ||||| || || | || ||||| || || ||||| |||||||| ||||| Sbjct 17641 TAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 17582 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||| || |||||||| ||||| | || ||||| | ||||| ||||| Sbjct 17581 GATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGTCTT 17522 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||||||| |||||||| || | ||||||| Sbjct 17521 TCCTGTCAAGGTTTTTACAAAGATCTGCATTT 17490 >seq4435 Length=89394 Score = 159 bits (176), Expect = 8e-34 Identities = 171/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| |||| || | |||||| || |||||||| || || || ||||| | ||||| Sbjct 36494 TCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGACAGAGT 36435 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 |||||||||||| | ||| || ||||| ||||| | | ||||||||||| ||||| || Sbjct 36434 TCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCC 36375 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||| || || |||||| || || || ||||| ||||| ||| ||| ||||| Sbjct 36374 TTCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTC---ACTGGGTTCAACTTC 36318 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| ||||| | |||||| ||||| | ||||| Sbjct 36317 GAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 131 bits (144), Expect = 4e-25 Identities = 163/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981 ||||||| ||| || || | ||| ||||| || |||||||||||||| | |||| || | Sbjct 36034 AGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAG-GTACG 35976 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||| || || ||||| | || |||||| || || ||||| || || Sbjct 35975 TCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCCCTC 35916 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| ||||| ||||||||||| |||||||| | || || || | || Sbjct 35915 CTTATCTTGGATTTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACCTCCAAAGT 35856 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | ||||| ||||| | || ||||| || | ||||||| Sbjct 35855 GATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCATTT 35815 Score = 131 bits (144), Expect = 4e-25 Identities = 163/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| || | |||||| || || ||||| ||||| |||||||| | || ||||| Sbjct 36718 AGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTTCTT 36659 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||||| || || || || | | ||||||||||||||| || || || Sbjct 36658 CCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCCTCC 36599 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 || |||||||| || || || || || || || || ||| ||| || |||||| Sbjct 36598 TTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATC---ACTGGGTTCTACCTCAAGG 36542 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || |||||||||| ||| || || || | ||||||| Sbjct 36541 GTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || |||||||| ||||| | | || | |||||||| | ||| Sbjct 36248 GTGAAGTGTGGACTCCTTCTGAATATTATAATCTGATAAGGTGCGACCATCTTCCAACTG 36189 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||| || || | || |||||| ||||| ||||| |||||||| ||||||||||| Sbjct 36188 TTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTT 36129 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 || || || ||||| || || ||| ||| ||||| || |||| || ||||| Sbjct 36128 GGCTTTTACATTTTCAATAGTATC---ACTGGGTTCAACTTCCAGAGTAATTGTTTTTCC 36072 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | |||||| Sbjct 36071 AGTAAGTGTTTTAACAAAGATTTGCAT 36045 >seq1267 Length=316221 Score = 159 bits (176), Expect = 8e-34 Identities = 171/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| |||| || | |||||| || ||||||||||||||||||||||| | | ||| Sbjct 205980 TCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGT 206039 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | |||||| ||||| || || | | ||| ||||||||||| || || Sbjct 206040 TCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGGATCCC 206099 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||| || || ||||| ||| ||||| ||||| ||||| ||| ||| ||||| Sbjct 206100 CTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTC---ACTTGGTTCAACTTC 206156 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || ||||||| ||| || || || | ||||| Sbjct 206157 CAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 Score = 154 bits (170), Expect = 3e-32 Identities = 170/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| |||| || | |||||| || ||||||||||||||||||||||| | | ||| Sbjct 206208 TCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGT 206267 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | |||||| ||||| || || | | || ||||||||||| || || Sbjct 206268 TCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCC 206327 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||||||| || || ||| || || ||||| ||||| ||| ||| ||||| Sbjct 206328 TTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTC---ACTGGGTTCAACTTC 206384 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| || || | ||||| Sbjct 206385 TAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||||||| || || |||||||| || ||||||||||| || || || | | || | Sbjct 206439 GAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCG 206498 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || | ||| || || || || || | || ||||||||||| ||||| ||||| Sbjct 206499 ACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTC 206558 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||||||||| |||||| || ||||||||||| | |||||||| || || Sbjct 206559 TTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGT 206618 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| | |||||||| || | ||||| Sbjct 206619 GATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 120 bits (132), Expect = 7e-22 Identities = 161/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCC 194983 |||||| || | ||| || || ||||| || || || || ||||| | |||| ||||| | Sbjct 205758 TCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGACAAG-GTTCTTC 205816 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 |||| || || ||||| || || || || | | || ||||||||||| || || |||| Sbjct 205817 CATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCCCTCTT 205876 Query 195044 TGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGG 195100 | || |||||||| ||| || || ||||| ||||| ||| ||| ||||| |||| Sbjct 205877 TATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTC---ACTTGGTTCAACTTCCAGGG 205933 Query 195101 TAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | | || || ||||||| ||| || || || | |||||| Sbjct 205934 TGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 >seq5467 Length=66102 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | || || ||| || |||||||| || || ||||| |||||||| || | ||| || Sbjct 29826 TCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAAAGGGT 29885 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || || || |||||||| || || |||| ||| |||||||| ||||| || Sbjct 29886 CCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGAATACC 29945 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||||||||||| || || |||||||| || || | ||| ||||| || Sbjct 29946 TTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACTTCCAG 30005 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| || || | ||||| Sbjct 30006 AGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Score = 134 bits (148), Expect = 3e-26 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | ||||| || | ||| || ||||| |||||||| ||||| | ||| || | Sbjct 29602 AGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAGAAAGGGTCCGT 29661 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || ||||| |||||||| || || |||| |||||||| || |||||||||||| Sbjct 29662 CCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCT 29721 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 |||||||| || ||| || || |||||||| ||||| ||| |||||| || | Sbjct 29722 TTGTCTTGGATCTTTGCTTTTACATTCTCAATTGTGTC---ACTTGGTTCCACCTCCAAA 29778 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || | || || || || | ||||| Sbjct 29779 GTGATAGTTTTTCCAGTGAGGGTCTTGACAAAAATCTGCAT 29819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105404770682231