Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4435 125 5e-24 seq629 122 6e-23 seq5467 114 8e-21 seq1267 107 1e-18 >seq4435 Length=89394 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || |||| |||||||||| || ||||||||||||||| || || || Sbjct 36727 CCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGAC 36668 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||| | |||| |||| || || || ||||| |||| | ||| |||||| | || Sbjct 36667 AGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGG 36608 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || |||||| ||| || | | || | |||| || || || Sbjct 36607 ATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACC 36548 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||||||||| || |||||||| ||||| || ||||| Sbjct 36547 TCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCAT 36501 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | ||||| || ||||||| ||| |||||||| |||||||| || | Sbjct 36501 TTCCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTG 36442 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| |||| || | ||||||||| ||||| |||| | || |||||| | | Sbjct 36441 ACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTG 36382 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || || || ||| || | | || | |||| || |||| Sbjct 36381 GAATTCCTTCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAA 36322 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| |||||| || || || || ||||| || || ||||||||||| Sbjct 36321 CTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 >seq629 Length=499154 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| |||| ||||| || | || |||||| || ||||| ||||| ||| Sbjct 5964 CCTCCCCTCAGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAA 5905 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || |||| |||| ||||| ||||| || ||||| || |||| || ||||| | || Sbjct 5904 AGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGG 5845 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| ||| || |||| | |||| | ||| || Sbjct 5844 ATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACT 5785 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || ||||||||||| ||||| ||||||||||| || ||||| Sbjct 5784 TCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| || || || || | ||| |||| || || ||||| || ||||| Sbjct 6156 TCCTTTTGAATGTTGTAATCTGAGAGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAG 6097 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| || ||||| | || | || |||||||| ||||| ||| || Sbjct 6096 ATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTC 6037 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | |||| | ||| || || | || ||||||||||| ||||| ||||||||| Sbjct 6036 TCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACA 5977 Query 34971 AAGATCTGCAT 34981 || || ||||| Sbjct 5976 AAAATTTGCAT 5966 >seq5467 Length=66102 Score = 114 bits (126), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | || ||||| |||| || ||| || || || || ||||| ||| Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||| ||||| || ||||| || |||| |||||||||| | || Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || ||||| ||| || ||| || || || || | |||| | || | Sbjct 29941 ATACCTTCTTTGTCTTGAATTTTTGCTTTTAC--ATTCTCAATAGTATCACTAGGTTCTA 29998 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| || || || || ||||||||||||||||| Sbjct 29999 CTTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| ||||| || |||||| | ||| |||| ||||||||||| || ||||| Sbjct 29628 TTCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAA 29687 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| || ||||| | || | || || ||||| ||||| ||| || | Sbjct 29688 AATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTTAC--A 29745 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| | || || || | || || |||||||| ||||| ||||| Sbjct 29746 TTCTCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTG 29805 Query 34968 ACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 29806 ACAAAAATCTGCAT 29819 >seq1267 Length=316221 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | ||||| || ||||||| ||| ||||| ||||| || || || || Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| | |||| |||| ||| ||||| ||||| || | | |||||||||| | || Sbjct 206035 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGG 206094 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||| || || || || || ||| | | || | |||| | ||||| Sbjct 206095 ATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACT 206154 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || ||||| || || |||||||| |||||||||||||| Sbjct 206155 TCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | ||||| || ||||||| ||| ||||| ||||| || || || || Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| | |||| |||| ||| ||||| ||||| || | | ||||||||| | || Sbjct 206263 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 206322 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| || || | | || | |||| || ||||| Sbjct 206323 ATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACT 206382 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| |||||||| || || || || ||||||||||||||||| Sbjct 206383 TCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || | |||| || |||||| |||||||||||||| || | | || || Sbjct 206443 CTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGACCA 206502 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||| ||||||||| ||||| |||| || || |||||| | || | || || ||| Sbjct 206503 TCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCTTTG 206562 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||| || ||||| | | || | |||| | ||| || || | || || Sbjct 206563 TCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTGATA 206622 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || || || || |||||||||||||| Sbjct 206623 GTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323498911525704