Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq994 163 3e-35 seq5418 123 3e-23 seq3845 116 4e-21 seq6658 102 1e-16 >seq994 Length=361151 Score = 163 bits (180), Expect = 3e-35 Identities = 359/529 (68%), Gaps = 17/529 (3%) Strand=Plus/Minus Query 142376 AATAAAGGTTTAGAAGGAGCTATTT-TAAAATATCCAAATGATATGTATATACCAGGTAA 142434 ||| | ||||||||||| |||| || | ||| |||| | | |||| ||||| || Sbjct 158646 AATCAGGGTTTAGAAGG-GCTAGTTCTGAAAGGCACAAACAACACGTATGAGCCAGGAAA 158588 Query 142435 AAGAAAATGGATAAAGATAAAAAGGGATTACTTAAACGATGGTGCAATGGCAGATTCAGC 142494 | || | ||| |||| || |||| |||||| || | ||||| ||||||||||||||||| Sbjct 158587 ACGACATTGGCTAAAAATTAAAAAAGATTACCTAGAAGATGGAGCAATGGCAGATTCAGC 158528 Query 142495 AGATTTAGTCGTATTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGGATAATGTC 142554 ||| | || || | || ||||||| ||| | || || | | || || || ||||| Sbjct 158527 TGATCTTGTTGTTCTTGGAGCATATTTTGGAACTGGAAATA---AAGGTGGAATGATGTC 158471 Query 142555 TATATTTCTTATGGGTTGTTATGATGAAGATACAAATACATGGAAAACTGTTACAAAA-T 142613 |||||||| ||||| ||||| ||| | || || | |||| |||||||||||| | Sbjct 158470 AATATTTCTGATGGGATGTTACGATCCTGCTAGTAAAAAATGGTGTACTGTTACAAAAGT 158411 Query 142614 G--TTCAGGATTCAATGATGAAACATTAAAGGAATTACAGTC---AATTGATATGATAAA 142668 | | |||| |||||| || || | || | || | | || |||| ||| Sbjct 158410 GCATGGAGGACATGATGATGCTACTTTTGAAAAACTCCAAACTGAGCTGGACATGAAAAA 158351 Query 142669 AATCAGTAAAAATAAAGATAAAATACCAACATGGTTAAA---TATTAACAGTATACATTA 142725 ||| || || | | |||| | || | ||| | || | ||| | | | ||| Sbjct 158350 AATTAGGAAGGACCCAAGTAAAGTTCCTGCTTGGCTGAAAGTGAATAAAACTCT-CAT-- 158294 Query 142726 TCCAGATTTTATTGTTAATAATCCAAAAACATCACCTGTTTGGGAAATATCCGGATATGA 142785 ||| |||||| ||| |||| |||| |||| || || || |||||||| ||| || Sbjct 158293 TCCTGATTTTGTTGCTAATGATCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGCAGA 158234 Query 142786 ATTTACAAAATCACCATCTCATACAGCAGATGGGATATCTATTAGATTTCCTAGATGTAA 142845 |||||||||| || | |||||||| |||| || |||||| | ||||| ||| | Sbjct 158233 ATTTACAAAAGCAGAAATCCATACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGTTGC 158174 Query 142846 AAATATAAGAAATGATAAAGATTGGTTATCTGCAACAAATTTACAGGAA 142894 ||| || || |||| ||| ||| | || ||||| ||||||||| Sbjct 158173 AAAAATCCGAGATGACAAAACATGGAAAGAAGCCACAAACTTACAGGAA 158125 >seq5418 Length=65370 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 37565 GTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATG 37624 ||||||||||||||||||||||||||| ||||||||||| | |||| ||||| || Sbjct 6920 GTTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTG 6861 Query 37625 TCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 37684 |||||| |||| | ||| | || ||| |||| | ||| || ||||| |||||||| || Sbjct 6860 TCTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTC 6801 Query 37685 AACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTAT 37744 | |||||||| ||| ||| | || |||||| ||| || || | || || Sbjct 6800 TGCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAAT 6741 Query 37745 TGGAAATATTACAAATCT 37762 ||||| |||||||| || Sbjct 6740 GGGAAACATTACAAACCT 6723 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 || || || ||||||| |||||||||||||| ||||||| ||||||||| || || || Sbjct 7515 ATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACATTTTCAATGGCAATTTGG 7456 Query 37506 AAACCATAAAAACACCTAGCTTC 37528 ||||||||||||||||||||||| Sbjct 7455 AAACCATAAAAACACCTAGCTTC 7433 >seq3845 Length=110360 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| || | ||||||| || || || || ||||| | |||||| || ||| Sbjct 72983 TCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCTTA 72924 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| |||||| || ||||||||||| || || || || || ||||| ||| Sbjct 72923 AGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGGCT 72864 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 |||| || ||| ||||| | || || | ||||| || | ||||||||| Sbjct 72863 ACAACTCGCTCACCAAAAGTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATCTGCT 72804 Query 37380 TTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGA 37421 || || ||||| | ||||||||||| || || ||| Sbjct 72803 TTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGA 72762 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499 ||| | || || || ||||||| ||||| |||||||| || || | ||||||||| || Sbjct 72341 TCTCTGATGTATGTGTCAATTAACAAACTGTACATTTCTGAATGGACATTTTCAATGGCA 72282 Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 || || ||||||||||||||||||||||| | || |||||| || Sbjct 72281 ATTTGGAAACCATAAAAACACCTAGCTTCTGTTACTTGAACTTC 72238 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 ||||||||||| |||||||||||||| ||||||||||| || | | ||||| ||| Sbjct 71034 TTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTGT 70975 Query 37626 CTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCA 37685 |||||| | | ||| || | ||| | | | ||||| || | ||||||||| || Sbjct 70974 TGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTCT 70915 Query 37686 ACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATT 37745 || ||||| || ||| ||| ||||||||| ||| || || | || || Sbjct 70914 ACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAATG 70855 Query 37746 GGAAATATTACAAATCT 37762 ||||| || |||||||| Sbjct 70854 GGAAAAATAACAAATCT 70838 >seq6658 Length=47451 Score = 102 bits (112), Expect = 1e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622 ||||| || | ||||| ||||||||||| |||||||| || | || | |||||||| Sbjct 26428 AAGTTCTCCATCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAAG 26487 Query 37623 TGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 37682 |||||||| ||| | ||| || |||||||| ||| ||||| || || || ||||| Sbjct 26488 TGTCTTTCTTCAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTCT 26547 Query 37683 TCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGT 37742 ||| | ||||| || ||| ||| || ||||| ||||||||| | | Sbjct 26548 TCAGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACTCA 26607 Query 37743 ATTGGAAATATTACAAATC 37761 ||||| || |||||||||| Sbjct 26608 ATTGGTAAAATTACAAATC 26626 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/147 (76%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 36822 ATTTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATT---CATAACT 36878 |||| |||||| ||| |||||||| |||| | || | ||| | | || ||||||| Sbjct 23423 ATTTGTTAAAAGTCTGCATCTAACCTAAAAGT-ATGTTCTTCT--CGTTTGGCCATAACT 23479 Query 36879 CCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGA 36937 || ||||||||||||| || | |||| ||||| || ||||| |||||||||||||| Sbjct 23480 CCACACCTTTGATATTCTCCTAC-CTTCTTCTCGAAGAAGTTTGTTTTTCCTTCTAGTGA 23538 Query 36938 TATATTTTCCATAAAATCAAATGGATT 36964 |||| |||||||| ||||| || || Sbjct 23539 AATATGCTCCATAAAGTCAAAGGGGTT 23565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590193396099720