Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq994 163 3e-35
seq5418 123 3e-23
seq3845 116 4e-21
seq6658 102 1e-16
>seq994
Length=361151
Score = 163 bits (180), Expect = 3e-35
Identities = 359/529 (68%), Gaps = 17/529 (3%)
Strand=Plus/Minus
Query 142376 AATAAAGGTTTAGAAGGAGCTATTT-TAAAATATCCAAATGATATGTATATACCAGGTAA 142434
||| | ||||||||||| |||| || | ||| |||| | | |||| ||||| ||
Sbjct 158646 AATCAGGGTTTAGAAGG-GCTAGTTCTGAAAGGCACAAACAACACGTATGAGCCAGGAAA 158588
Query 142435 AAGAAAATGGATAAAGATAAAAAGGGATTACTTAAACGATGGTGCAATGGCAGATTCAGC 142494
| || | ||| |||| || |||| |||||| || | ||||| |||||||||||||||||
Sbjct 158587 ACGACATTGGCTAAAAATTAAAAAAGATTACCTAGAAGATGGAGCAATGGCAGATTCAGC 158528
Query 142495 AGATTTAGTCGTATTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGGATAATGTC 142554
||| | || || | || ||||||| ||| | || || | | || || || |||||
Sbjct 158527 TGATCTTGTTGTTCTTGGAGCATATTTTGGAACTGGAAATA---AAGGTGGAATGATGTC 158471
Query 142555 TATATTTCTTATGGGTTGTTATGATGAAGATACAAATACATGGAAAACTGTTACAAAA-T 142613
|||||||| ||||| ||||| ||| | || || | |||| |||||||||||| |
Sbjct 158470 AATATTTCTGATGGGATGTTACGATCCTGCTAGTAAAAAATGGTGTACTGTTACAAAAGT 158411
Query 142614 G--TTCAGGATTCAATGATGAAACATTAAAGGAATTACAGTC---AATTGATATGATAAA 142668
| | |||| |||||| || || | || | || | | || |||| |||
Sbjct 158410 GCATGGAGGACATGATGATGCTACTTTTGAAAAACTCCAAACTGAGCTGGACATGAAAAA 158351
Query 142669 AATCAGTAAAAATAAAGATAAAATACCAACATGGTTAAA---TATTAACAGTATACATTA 142725
||| || || | | |||| | || | ||| | || | ||| | | | |||
Sbjct 158350 AATTAGGAAGGACCCAAGTAAAGTTCCTGCTTGGCTGAAAGTGAATAAAACTCT-CAT-- 158294
Query 142726 TCCAGATTTTATTGTTAATAATCCAAAAACATCACCTGTTTGGGAAATATCCGGATATGA 142785
||| |||||| ||| |||| |||| |||| || || || |||||||| ||| ||
Sbjct 158293 TCCTGATTTTGTTGCTAATGATCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGCAGA 158234
Query 142786 ATTTACAAAATCACCATCTCATACAGCAGATGGGATATCTATTAGATTTCCTAGATGTAA 142845
|||||||||| || | |||||||| |||| || |||||| | ||||| ||| |
Sbjct 158233 ATTTACAAAAGCAGAAATCCATACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGTTGC 158174
Query 142846 AAATATAAGAAATGATAAAGATTGGTTATCTGCAACAAATTTACAGGAA 142894
||| || || |||| ||| ||| | || ||||| |||||||||
Sbjct 158173 AAAAATCCGAGATGACAAAACATGGAAAGAAGCCACAAACTTACAGGAA 158125
>seq5418
Length=65370
Score = 123 bits (136), Expect = 3e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 37565 GTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATG 37624
||||||||||||||||||||||||||| ||||||||||| | |||| ||||| ||
Sbjct 6920 GTTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTG 6861
Query 37625 TCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 37684
|||||| |||| | ||| | || ||| |||| | ||| || ||||| |||||||| ||
Sbjct 6860 TCTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTC 6801
Query 37685 AACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTAT 37744
| |||||||| ||| ||| | || |||||| ||| || || | || ||
Sbjct 6800 TGCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAAT 6741
Query 37745 TGGAAATATTACAAATCT 37762
||||| |||||||| ||
Sbjct 6740 GGGAAACATTACAAACCT 6723
Score = 100 bits (110), Expect = 3e-16
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505
|| || || ||||||| |||||||||||||| ||||||| ||||||||| || || ||
Sbjct 7515 ATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACATTTTCAATGGCAATTTGG 7456
Query 37506 AAACCATAAAAACACCTAGCTTC 37528
|||||||||||||||||||||||
Sbjct 7455 AAACCATAAAAACACCTAGCTTC 7433
>seq3845
Length=110360
Score = 116 bits (128), Expect = 4e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
||||||||||| || | ||||||| || || || || ||||| | |||||| || |||
Sbjct 72983 TCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCTTA 72924
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||||| |||||| || ||||||||||| || || || || || ||||| |||
Sbjct 72923 AGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGGCT 72864
Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379
|||| || ||| ||||| | || || | ||||| || | |||||||||
Sbjct 72863 ACAACTCGCTCACCAAAAGTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATCTGCT 72804
Query 37380 TTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGA 37421
|| || ||||| | ||||||||||| || || |||
Sbjct 72803 TTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGA 72762
Score = 98.7 bits (108), Expect = 1e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499
||| | || || || ||||||| ||||| |||||||| || || | ||||||||| ||
Sbjct 72341 TCTCTGATGTATGTGTCAATTAACAAACTGTACATTTCTGAATGGACATTTTCAATGGCA 72282
Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543
|| || ||||||||||||||||||||||| | || |||||| ||
Sbjct 72281 ATTTGGAAACCATAAAAACACCTAGCTTCTGTTACTTGAACTTC 72238
Score = 89.7 bits (98), Expect = 6e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625
||||||||||| |||||||||||||| ||||||||||| || | | ||||| |||
Sbjct 71034 TTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTGT 70975
Query 37626 CTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCA 37685
|||||| | | ||| || | ||| | | | ||||| || | ||||||||| ||
Sbjct 70974 TGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTCT 70915
Query 37686 ACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATT 37745
|| ||||| || ||| ||| ||||||||| ||| || || | || ||
Sbjct 70914 ACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAATG 70855
Query 37746 GGAAATATTACAAATCT 37762
||||| || ||||||||
Sbjct 70854 GGAAAAATAACAAATCT 70838
>seq6658
Length=47451
Score = 102 bits (112), Expect = 1e-16
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622
||||| || | ||||| ||||||||||| |||||||| || | || | ||||||||
Sbjct 26428 AAGTTCTCCATCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAAG 26487
Query 37623 TGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 37682
|||||||| ||| | ||| || |||||||| ||| ||||| || || || |||||
Sbjct 26488 TGTCTTTCTTCAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTCT 26547
Query 37683 TCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGT 37742
||| | ||||| || ||| ||| || ||||| ||||||||| | |
Sbjct 26548 TCAGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACTCA 26607
Query 37743 ATTGGAAATATTACAAATC 37761
||||| || ||||||||||
Sbjct 26608 ATTGGTAAAATTACAAATC 26626
Score = 93.3 bits (102), Expect = 5e-14
Identities = 112/147 (76%), Gaps = 8/147 (5%)
Strand=Plus/Plus
Query 36822 ATTTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATT---CATAACT 36878
|||| |||||| ||| |||||||| |||| | || | ||| | | || |||||||
Sbjct 23423 ATTTGTTAAAAGTCTGCATCTAACCTAAAAGT-ATGTTCTTCT--CGTTTGGCCATAACT 23479
Query 36879 CCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGA 36937
|| ||||||||||||| || | |||| ||||| || ||||| ||||||||||||||
Sbjct 23480 CCACACCTTTGATATTCTCCTAC-CTTCTTCTCGAAGAAGTTTGTTTTTCCTTCTAGTGA 23538
Query 36938 TATATTTTCCATAAAATCAAATGGATT 36964
|||| |||||||| ||||| || ||
Sbjct 23539 AATATGCTCCATAAAGTCAAAGGGGTT 23565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590193396099720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |