Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5467 163 2e-35 seq1156 158 1e-33 seq4435 154 1e-32 seq1267 154 1e-32 seq629 141 7e-29 >seq5467 Length=66102 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || || | ||| | |||||| || ||||| ||||| |||||||| || | Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||| ||||||||||| || | | || || || || ||| Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||||||||||| ||||||| | || | ||| ||| | ||| ||| Sbjct 29941 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACT 30000 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || ||||| | |||||||| |||| ||||| ||||| ||||||||||| Sbjct 30001 TCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCATGGT 30050 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 ||||||||||| || ||||| ||||| | | || | |||| |||| || |||||| Sbjct 29623 GTAGATTCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCATCCTCCAGCTGTTTACCT 29682 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| |||| | |||||| || || |||||||||||||| ||||| || ||| |||| Sbjct 29683 GCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTT 29742 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | |||||| | |||||| || | ||||| ||||| || || | || Sbjct 29743 ACATTCTCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGTC 29802 Query 101453 TTTACAAATATCTGCAT 101469 || ||||| |||||||| Sbjct 29803 TTGACAAAAATCTGCAT 29819 >seq1156 Length=327524 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||||| ||| | |||||| || || ||||| || ||||||||||| | Sbjct 17718 CCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGAT 17659 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | ||||| ||||||||||| || | ||||||||| || ||| Sbjct 17658 AGTGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGA 17599 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| |||||| |||||| | || | ||||||| | || ||| Sbjct 17598 ATTCCTTCTTTATCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACT 17539 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || || || || ||||||||||| |||||||| Sbjct 17538 TCTAAGGTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCAT 17492 >seq4435 Length=89394 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | | ||||| ||||| ||||| ||||| || || || ||||| | Sbjct 36501 TTCCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTG 36442 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| |||| || || || || |||||||| || || | |||||| || || | Sbjct 36441 ACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTG 36382 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||||||||| || |||||| ||| ||| |||| | ||||||| | ||| | Sbjct 36381 GAATTCCTTCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAA 36322 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||| || || | || ||||| || | |||||| || || ||||||||| Sbjct 36321 CTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCATG 36272 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || || || || ||||| ||||| | | || | |||| ||| Sbjct 36253 ACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTGATAAGGTGCGACCATCTTCC 36194 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || || || |||||||| ||||| | |||||||| || ||||| ||||||||||||||| Sbjct 36193 AACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGA 36134 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||||||| |||| | ||| ||| | ||| ||||| ||||| | ||||| Sbjct 36133 ATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTTCAACTTCCAGAGTAATTGTTTTT 36074 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| ||||| || ||||| Sbjct 36073 CCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| |||||||| || || |||||||| | | ||||| |||| ||| Sbjct 36709 ACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTTCTTCCATCTTCC 36650 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| || || | ||||| || || || || || || ||||||||| Sbjct 36649 AATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCCTCCTTATCTTGA 36590 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| |||| | || ||| | ||| || ||||| |||| ||||| Sbjct 36589 ATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACCTCAAGGGTGATGGTTTTT 36530 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || ||||| || ||||| Sbjct 36529 CCTGTCAGAGTCTTAACAAAAATTTGCAT 36501 Score = 116 bits (128), Expect = 3e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 || || ||||| ||||| | | || | |||| || ||||| || |||||||| ||| Sbjct 32842 TTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATC 32783 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 || | |||||||| || ||||| ||||||||||| || |||||| ||| || |||| Sbjct 32782 AATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCA 32723 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | ||| ||| | ||| ||||| || || | || ||||| || | |||||| || || Sbjct 32722 ATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAG 32663 Query 101462 ATCTGCATG 101470 ||||||||| Sbjct 32662 ATCTGCATG 32654 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| | ||||| || || || ||||||||||| | | || | |||| || Sbjct 36026 AACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGTACGTCCATCTTC 35967 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||| ||||| || ||||| || || | |||||||| || ||||| || || |||||||| Sbjct 35966 CAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCCCTCCTTATCTTG 35907 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||| || | |||| ||||| | || || || | ||||| || || Sbjct 35906 GATTTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACCTCCAAAGTGATTGTCTT 35847 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| |||| || ||||||||||||||||| Sbjct 35846 GCCTGTTAGCGTCTTTACAAATATCTGCAT 35817 >seq1267 Length=316221 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||||| ||||| || || |||||||| ||||||||||| | Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||| ||||| |||||||| ||||| | ||| || || || || Sbjct 206263 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 206322 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| || || || ||| |||| | |||||| | ||| ||| Sbjct 206323 ATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACT 206382 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || | ||||||||||| | ||||| ||||| ||||||||| Sbjct 206383 TCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCATG 206430 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||||| ||||| || || |||||||| ||||||||||| | Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||| ||||| |||||||| ||||| | || || || || || Sbjct 206035 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGG 206094 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || |||||||| || ||||| ||||| |||| | ||||||| | ||| ||| Sbjct 206095 ATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACT 206154 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| ||||| || || | ||| || ||||| ||||||||| Sbjct 206155 TCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCATG 206202 Score = 149 bits (164), Expect = 5e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||| |||||| |||||||||||||| || || || || | | || | |||| Sbjct 206446 AACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGACCATCC 206505 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| || || || ||||| || || | |||||| || || ||||| |||||||| ||| Sbjct 206506 TCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCT 206565 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 |||||||| || ||| |||| | |||||| | |||||||| ||||||| ||| Sbjct 206566 TGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTGATAGTT 206625 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| ||||||||||| |||||||| Sbjct 206626 TTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 >seq629 Length=499154 Score = 141 bits (156), Expect = 7e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| ||||||||||||||||| || ||||| || | | |||| |||| || Sbjct 5947 AACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTC 5888 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || ||| ||||| ||||| |||| | |||||| || || || |||||||| || ||||| Sbjct 5887 CAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTG 5828 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || ||| ||||||| | |||| |||||| | |||||||| | ||||| ||||| Sbjct 5827 GATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTT 5768 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || | || || ||||| || |||||||| Sbjct 5767 TCCAGTGAGGGTCTTCACAAAAATTTGCATGGT 5735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394893292195101