Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5467 107 1e-18 seq1156 107 1e-18 seq1267 87.8 1e-12 >seq5467 Length=66102 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||| |||||||| || | || | || |||| ||| ||||| ||||| Sbjct 29629 TCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAA 29688 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| |||||| || | |||| ||| || ||||| |||||| ||||||| Sbjct 29689 ATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTC 29748 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || | |||||||||| || || |||||||| || | || || ||| Sbjct 29749 TCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTGACA 29808 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 29809 AAAATCTGCATC 29820 >seq1156 Length=327524 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | || | ||| || ||| |||||| |||||||||||||| ||| Sbjct 17718 CCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGAT 17659 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | || || | |||||| || |||||||| | || ||||||||| | |||| Sbjct 17658 AGTGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGA 17599 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || || ||| |||||| | | || || | ||| || Sbjct 17598 ATTCCTTCTTTATCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACT 17539 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || ||||| ||||| ||||||||||| |||||||| Sbjct 17538 TCTAAGGTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCAT 17492 >seq1267 Length=316221 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || |||| || ||| || || || || |||||||||||||||||||||||| Sbjct 205974 GCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGA 206033 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || ||||||||||| || ||||| |||| | || || || | || Sbjct 206034 TAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGG 206093 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||| || || || || ||||| | | || || | || || Sbjct 206094 GATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAAC 206153 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || |||| ||| || ||||| |||||||| Sbjct 206154 TTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || |||| || ||| || || || || |||||||||||||||||||||||| Sbjct 206202 GCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGA 206261 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || ||||||||||| || ||||| |||| | ||| || || | || Sbjct 206262 TAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGG 206321 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || || ||||| ||||| || ||| | | | || | || || Sbjct 206322 GATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAAC 206381 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 206382 TTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379606112735139