Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1267 113 4e-20 seq1156 87.8 2e-12 seq4435 86.0 5e-12 seq2201 82.4 6e-11 >seq1267 Length=316221 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||| |||| || ||||| || || ||| ||| ||| Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||||| |||||||| ||| | ||| ||| ||| Sbjct 206597 GACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAA 206538 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | || ||||| || ||||| ||||| ||| | || || | || |||||| Sbjct 206537 CAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTATAAC 206478 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||||||||| || | || || ||| | || || || || Sbjct 206477 ATTCAAAAAGAATCTACTCTTCATCTAGTGTTGAGACTCCGTGGGGGCAT 206428 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || ||||||||||| ||| ||| ||||| Sbjct 205973 ATGCAAATCTTTGTTAAGACTCTGACAGGTAAAACCATCACCCTGGAAGTTGAACCAAGT 205914 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| || |||||||| | || ||| || Sbjct 205913 GACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAGGGGATCCCTCCAGACCAG 205854 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| ||||| ||| |||| ||| | ||| || | ||||||||| Sbjct 205853 CAGAGGTTAATTTTTGCTGGCAAGCAACTGGAGGATGGAAGAACCTTGTCAGATTATAAC 205794 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || || || || || || ||| | ||||| ||||| || || || Sbjct 205793 ATACAGAAGGAGTCGACCCTCCACTTAGTATTGAGATTGCGTGGTGG 205747 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || || |||||||||||| ||| ||||| Sbjct 206429 ATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGT 206370 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| |||||||| ||| | || ||| || Sbjct 206369 GACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 206310 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| || || || ||||||||| | |||| | | ||||| || Sbjct 206309 CAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206250 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| || || || ||| | || | || | ||||||| || Sbjct 206249 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGGCAT 206200 >seq1156 Length=327524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || ||||||||||| || || || || || |||||| ||| || ||| Sbjct 17489 AAAATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAGCCT 17548 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || | | || | ||| ||||||| || ||||| ||| | ||| ||| Sbjct 17549 AGTGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 17608 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||||||| | || ||||| || || || | |||||| | ||| | | ||||| Sbjct 17609 CAACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAGATTAC 17668 Query 28731 AACATTCAAAAAGAATCTACTCTGCA 28756 || ||||| ||||| || ||||| || Sbjct 17669 AATATTCAGAAAGAGTCCACTCTTCA 17694 >seq4435 Length=89394 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||||| || || ||||| ||| | || ||| |||||||| | |||||||| Sbjct 36352 AAGCAAAAA-TCCAGGATAAAGAAGGAATTCCACCAGACCAACAGAGGTTAATCTTTGCA 36410 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || ||||| || |||||| | |||| || | ||||||||||| || ||||| ||||| Sbjct 36411 GGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAACATCCAGAAAGAGTCTACA 36470 Query 28752 CTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||| | || | || | ||||||| || Sbjct 36471 CTTCACTTAGTCCTGAGGCTCAGAGGAGGAAT 36502 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || |||||||| ||| || ||||| Sbjct 36500 AATGCAAATTTTTGTTAAGACTCTGACAGGAAAAACCATCACCCTTGAGGTAGAACCCAG 36559 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || || || | || || || |||||| | || ||| | Sbjct 36560 TGATACAATCGAAAATGTGAAAGCTAAGATTCAA-GATAAGGAGGGAATCCCTCCAGACC 36618 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 |||| || | || ||||| || || |||||||||||| | ||| || | ||||| | Sbjct 36619 AACAAAGGTTAATTTTTGCTGGGAAGCAATTGGAAGATGGAAGAACCCTGTCAGATTACA 36678 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||| |||||||| || || ||| ||||| | ||| | || ||||| Sbjct 36679 ACATTCAGAAAGAATCAACCCTTCACTTGGTACTGAGACTGCGTGGAGG 36727 >seq2201 Length=213340 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 || || |||||||| |||||||| || || || |||||||| |||| || | ||| Sbjct 161501 GACCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACTCTGTCTGAT 161560 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||| || || ||||||||||| ||| | || |||||||| |||| || Sbjct 161561 TACAACATCCAGAAGGAATCTACTCTTCACTTAGTTCTAAGATTAAGAGGTGG 161613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423917886989547