Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_021168.1 Length=34391 Score E Sequences producing significant alignments: (Bits) Value seq70663 179 8e-41 seq73759 95.1 3e-15 >seq70663 Length=227 Score = 179 bits (198), Expect = 8e-41 Identities = 156/189 (83%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 5696 TGGTCAGAAAAGACAATCTTTTTATTGTCAAGTTTGGTGGCAAACGACCCGTAGAGGGCG 5755 |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| Sbjct 45 TGGTCAGAAAAGACAATCTTTTG--TGTCAAGCTTGGTGGCAAACG-CCCGTAGAGGGCG 101 Query 5756 TTAGATAGCAATTTGGCAATGGAACGTAAAGTTTGAtttttttCACGGTCGGCCCGCTCC 5815 || || ||||| ||||| ||||| || | ||||| ||||| | || ||||| |||||| Sbjct 102 TTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGGTTTTTG-CGCGATCGGCGCGCTCC 160 Query 5816 TTGGCCGCGATGTTAAGTTGTACGTACTCCCGGGCCACGCAGCGCCACTCCGGGAAAACA 5875 |||||||||||||| || || ||||| || || || ||||| ||||| || || |||| Sbjct 161 TTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCATTC--GGGAAACG 218 Query 5876 GTAGTGCGC 5884 || |||||| Sbjct 219 GTGGTGCGC 227 >seq73759 Length=212 Score = 95.1 bits (104), Expect = 3e-15 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 6138 CGGCCAGAGCCCTCTCGTACGGATTAAGGGGAGGACCCCAAGGCATGGGGTGGGTAAGGG 6197 |||| || || | |||||| || || || || |||||||| |||||||||||||| || | Sbjct 74 CGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGGTGGGTGAGCG 133 Query 6198 CGGAAGCGTACATGCCACAAATGTCATAAACATAAAGAGGCT 6239 |||| ||||||||||| |||||||| |||| | | | |||| Sbjct 134 CGGAGGCGTACATGCCGCAAATGTCCGAAACGTGAGGGGGCT 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109555216402698