Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4435 181 2e-40 seq1267 174 3e-38 seq1156 168 1e-36 seq5467 136 7e-27 >seq4435 Length=89394 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | ||| | |||||||| || | ||| | ||| || ||||||||| || Sbjct 36274 ATGCCACCACGCAACCTAAGTACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCT 36215 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| || | | ||| || || ||||| || |||||||| ||||| |||||||| || Sbjct 36214 GATAAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGT 36155 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| ||||||| ||||| |||| ||||||||| | ||| Sbjct 36154 GGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTTCA 36095 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || ||||| || || || ||||| ||||| |||||||| Sbjct 36094 ACTTCCAGAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 149 bits (164), Expect = 1e-30 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || || |||||||| || |||| ||| || |||||| Sbjct 36052 ATTTGCATCCCACCACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTG 35993 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || || || | ||| || || || ||||| ||||| |||||||| |||||| Sbjct 35992 TAATCTGACAAGGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGA 35933 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || ||||| || |||||||| ||||| | ||| | || || || ||| | Sbjct 35932 TCAGGTGGAATTCCCTCCTTATCTTGGATTTTAGCTTTGACGTTCTCTATGGTGTCGCTA 35873 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 | ||| || || | ||| || || || ||||||||||| ||||||||||| ||||||||| Sbjct 35872 GGCTCTACCTCCAAAGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCATTTTA 35813 Score = 145 bits (160), Expect = 1e-29 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||||||||| || ||||| || | ||| ||||||||||| || |||||||| ||||| Sbjct 32837 AATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATCAATCT 32778 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||| || || |||||||||||||| || ||||| | ||| | ||| |||||| Sbjct 32777 TTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCAATAGT 32718 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| | |||||||| || |||||||| || ||||| || ||||| || || || || Sbjct 32717 ATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTG 32658 Query 193358 CAT 193360 ||| Sbjct 32657 CAT 32655 Score = 143 bits (158), Expect = 5e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||| | | || || | || | ||||| |||||| || || Sbjct 36509 AATTTGCATTCCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTT 36450 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | ||||| ||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 36449 ATAATCTGACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTG 36390 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || |||||||||||||| || ||||| | ||| | |||| |||||| || Sbjct 36389 GTCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTCACT 36330 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| || |||||||| || ||||| || ||||| || || || ||||| Sbjct 36329 GGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 ||||||| || | || | ||||| ||| || || || || | ||||| ||| Sbjct 36712 AGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTTCTTCCATCT 36653 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || ||||| || || ||||||||||| || ||||| || ||||| ||||| || |||||| Sbjct 36652 TCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCCTCCTTATCT 36593 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || || | ||| | |||| || ||||| | || || || || || || ||| Sbjct 36592 TGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACCTCAAGGGTGATGGTT 36533 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || || ||||| ||||||||| Sbjct 36532 TTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 >seq1267 Length=316221 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||||| ||| |||||||| || || || | | ||| || Sbjct 206449 ACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGACCATCCTCC 206508 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || |||||||| |||||||||||||||||||| || || || ||||||||||| ||||| Sbjct 206509 AACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 206568 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||||| || | |||| ||| || || || ||| ||||| ||||| |||||||| Sbjct 206569 ATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTGATAGTTTTT 206628 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||||||||||||| || ||||| Sbjct 206629 CCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||| | | || || | || | ||| | |||||| |||||| Sbjct 205966 ATTTGCATGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTG 206025 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || ||||| ||||| ||| || || || ||||| |||||||| || || || || Sbjct 206026 TAATCAGATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGG 206085 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || |||||||| || ||||| | |||| ||| |||||| || Sbjct 206086 TCTGGAGGGATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTT 206145 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| || || |||||||||||||| || || || ||||| || ||||| Sbjct 206146 GGTTCAACTTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 Score = 127 bits (140), Expect = 4e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 193163 TGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCC 193222 ||| | |||||| |||||| || || ||||| ||||| ||| || || || ||||| Sbjct 206232 TGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATCTTCCAACTGCTTTCC 206291 Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 |||||||| || ||||| || || ||||| ||||||||||| ||||| || || | || Sbjct 206292 TGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTT 206351 Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342 | |||| ||| || || | ||||||||||| || || ||||| || || || || Sbjct 206352 CACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTAATGGTTTTGCCGGTAAGGGT 206411 Query 193343 TTTTACAAATATTTGCAT 193360 ||| ||||| || ||||| Sbjct 206412 TTTCACAAAGATCTGCAT 206429 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | ||||| | ||| | || | || | ||| || || ||||| || || Sbjct 205746 ACCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGA 205805 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || ||||| ||| || | ||| || || ||||||||||| ||||| || || ||||| Sbjct 205806 CAAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGG 205865 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || |||||||| || ||||| | || | |||| |||||| || | ||||| Sbjct 205866 GATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAAC 205925 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 205926 TTCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 >seq1156 Length=327524 Score = 168 bits (186), Expect = 1e-36 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193128 TATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAG 193187 || |||||||| | | || || || ||||| | || | |||||| |||||| || Sbjct 17724 TACATACCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAA 17665 Query 193188 TCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCA 193247 || |||| ||||| ||| |||| || ||||| ||||| |||||||||||||||||| Sbjct 17664 TCTGATAGTGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCA 17605 Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 || || ||||||||||||||||| ||||| | |||| ||| |||||| || || | Sbjct 17604 GGGGGAATTCCTTCTTTATCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGC 17545 Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||||| || ||||| || ||||| | ||||||||||| || |||||||| Sbjct 17544 TCTACTTCTAAGGTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCATTTT 17489 >seq5467 Length=66102 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||||||||| || |||||||| | || | || || ||||| ||||| Sbjct 29818 ATCCCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCA 29877 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | |||||| || |||||||| | ||| || || || || Sbjct 29878 GAAAGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGT 29937 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| | ||||| ||| ||||||||| || || Sbjct 29938 GGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCT 29997 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 29998 ACTTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896429217695760