Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4435 156 6e-33 seq1267 149 9e-31 seq1156 143 4e-29 seq5467 95.1 2e-14 seq5418 86.0 9e-12 >seq4435 Length=89394 Score = 156 bits (172), Expect = 6e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| | ||||||||||| ||||| | ||||| ||| | Sbjct 36045 ATGCAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACTCTGGAAGTTGAACCCAGT 36104 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||||| |||||||||||||| || || ||||| ||| Sbjct 36105 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 36164 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || ||| | |||||| | || ||||||||||||||| Sbjct 36165 CAAAGATTGATTTTTGCAGGGAAACAGTTGGAAGATGGTCGCACCTTATCAGATTATAAT 36224 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || ||||| || || Sbjct 36225 ATTCAGAAGGAGTCCACACTTCACTTGGT 36253 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || || ||||| || | ||||| ||| | Sbjct 32655 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 32714 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| |||||||||| ||||| || ||||||||||| || || ||||| ||| Sbjct 32715 GATACTATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAA 32774 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || || | |||||| | || ||||||||||||||| Sbjct 32775 CAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGGCGCACCTTATCAGATTATAAT 32834 Query 156003 AT 156004 || Sbjct 32835 AT 32836 Score = 113 bits (124), Expect = 7e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || || ||||| || | ||||| ||| | Sbjct 36273 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 36332 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| |||||| ||||| || ||||||||||| || || ||||| ||| Sbjct 36333 GACACTATTGAAAATGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGACCAA 36392 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || || || | ||| || || ||| | |||||| |||||| | ||||||||||| Sbjct 36393 CAGAGGTTAATCTTTGCAGGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAAC 36452 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || ||||| ||||| | || | ||||| || Sbjct 36453 ATCCAGAAAGAGTCTACACTTCACTTAGTCCTGAGGCTCAGAGGAGG 36499 Score = 87.8 bits (96), Expect = 3e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 155819 taaaatgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||||||||| |||||| | || || | || || || || || || || || || || Sbjct 35813 TAAAATGCAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGGTAGAGCC 35872 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 | || | || ||||| ||| |||||| |||||||| || || || || || || Sbjct 35873 TAGCGACACCATAGAGAACGTCAAAGCTAAAATCCAAGATAAGGAGGGAATTCCACCTGA 35932 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 ||||||||||| || | ||| || |||||| | |||||| | || || |||||||| Sbjct 35933 TCAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAGATTA 35992 Query 155999 TAATAT 156004 ||||| Sbjct 35993 CAATAT 35998 >seq1267 Length=316221 Score = 149 bits (164), Expect = 9e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || |||| || |||||||| || | ||||| ||| | Sbjct 206201 ATGCAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAGT 206142 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||| || |||||| || |||||||| || || |||||||| || Sbjct 206141 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCAG 206082 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||||| ||| || |||||| | |||||| ||||||||||| ||||| ||| Sbjct 206081 CAAAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206022 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || ||||| |||||| | || | ||||| || Sbjct 206021 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 205975 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || || ||||| ||||| ||||||| ||| | Sbjct 206429 ATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGT 206370 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| ||||| ||| || ||||| |||||||| || |||||||| || Sbjct 206369 GACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 206310 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || |||||| | |||||| ||||||||||| ||||| ||| Sbjct 206309 CAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206250 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || ||||| |||||| | || | ||||| || Sbjct 206249 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 206203 Score = 138 bits (152), Expect = 2e-27 Identities = 174/238 (73%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || |||| || ||||| || || | ||||| ||| | Sbjct 205973 ATGCAAATCTTTGTTAAGACTCTGACAGGTAAAACCATCACCCTGGAAGTTGAACCAAGT 205914 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| ||||| |||||| || |||||||| || || |||||||| || Sbjct 205913 GACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAGGGGATCCCTCCAGACCAG 205854 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || || |||| ||| || ||||| || || ||| ||||| || ||||||||||| Sbjct 205853 CAGAGGTTAATTTTTGCTGGCAAGCAACTGGAGGATGGAAGAACCTTGTCAGATTATAAC 205794 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT--GTAAAATT 156058 ||| || ||| |||| || || ||||| || ||||| | || ||| |||||||| Sbjct 205793 ATACAGAAGGAGTCGACCCTCCACTTAGTATTGAGATTGCGTGGTGGTCAGTAAAATT 205736 Score = 111 bits (122), Expect = 2e-19 Identities = 184/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 155778 AACaataa-agtatttattgtttataataaaaatttatgtaataaa-atgcaaatattta 155835 || ||||| | || ||||| || || || ||||| | | ||| ||||| || ||| Sbjct 206704 AATAATAATAATAATTATTATTCTTATTATCAATTTCTAGATTAAGGATGCAGATCTTTG 206645 Query 155836 ttaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895 | ||||| | || ||||||||||| || | ||||| || | ||| | ||| || Sbjct 206644 TAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGTGACACCATTGAAA 206585 Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955 | || || ||||| ||||| |||||||| || || ||||| ||||| ||||| |||| Sbjct 206584 ATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAACAGAGATTAATTT 206525 Query 155956 ATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGG 156015 ||| || || ||| | || ||| | || || ||||| ||||| || ||||| Sbjct 206524 TTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTATAACATTCAAAAAGAAT 206465 Query 156016 CGACGCTTCATTTAGTGTTAAGA 156038 | || |||||| ||||||| ||| Sbjct 206464 CTACTCTTCATCTAGTGTTGAGA 206442 >seq1156 Length=327524 Score = 143 bits (158), Expect = 4e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 155820 aaaatgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | ||||| ||||| ||||| |||||||| |||||||| || | Sbjct 17489 AAAATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAGCCT 17548 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||| | |||| || || || ||||| |||||||||||||| || || || || Sbjct 17549 AGTGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 17608 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| ||||| || | ||| || |||||||| |||||| ||||| |||||||||| Sbjct 17609 CAACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAGATTAC 17668 Query 156000 AATATATCCAAAGAGGCGACGCTTCAT 156026 ||||| |||||| | || |||||| Sbjct 17669 AATATTCAGAAAGAGTCCACTCTTCAT 17695 >seq5467 Length=66102 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||||||||| || || || || ||| | Sbjct 29819 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAGT 29760 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || ||||| ||||||||||| || || || ||| Sbjct 29759 GACACAATTGAGAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCTGACCAA 29700 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||||| ||| ||||| ||||| || ||| | || | || ||||||||| Sbjct 29699 CAGAGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTATAAT 29640 Query 156003 AT 156004 || Sbjct 29639 AT 29638 >seq5418 Length=65370 Score = 86.0 bits (94), Expect = 9e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 18548 TTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGT 18607 || ||||||||||| || ||| || || || || ||||| |||| ||| || ||| Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 18608 TTTTCATTATCCTTGAGATTGTTCC-ATTCATCTATATCTTTTGATAGATCAACTTCTTC 18666 |||| | ||| || | | |||||| | |||| || ||| || |||| ||||||||||| Sbjct 6859 CTTTCTTCATCTTTTA-ACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTC 6801 Query 18667 CGATGTCCAAAAAGATGATTCGGCCTGTTTGTACAT 18702 | ||||||||| || | || ||| |||||||| Sbjct 6800 TGCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACAT 6765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729248302918800