Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4435 159 6e-34 seq1156 145 1e-29 seq5467 140 6e-28 seq1267 136 7e-27 seq629 131 3e-25 seq3845 111 3e-19 >seq4435 Length=89394 Score = 159 bits (176), Expect = 6e-34 Identities = 145/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||||||||| | || | || ||||| ||||| || |||||||| ||||| Sbjct 36227 AATATTATAATCTGATAAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAAATCAATCT 36168 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| || ||||| ||||||||||||||||| ||||| ||||||||| ||||| Sbjct 36167 TTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGT 36108 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| | ||| ||||| |||||||| ||||| ||||| | |||||||| || || || Sbjct 36107 ATCACTGGGTTCAACTTCCAGAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAGATTTG 36048 Query 172067 CAT 172069 ||| Sbjct 36047 CAT 36045 Score = 147 bits (162), Expect = 4e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| | || | ||||||||||| ||| || |||||| |||||| Sbjct 36046 ATCCCACCACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCT 35987 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || ||||| || || |||||||| |||||||| ||||| |||||| Sbjct 35986 GACAAGGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGT 35927 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| |||||| ||| || || ||| || || | ||| Sbjct 35926 GGAATTCCCTCCTTATCTTGGATTTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCT 35867 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 || || | ||| || || || || |||| || || | ||||||||||||||| Sbjct 35866 ACCTCCAAAGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCATTTTA 35813 Score = 127 bits (140), Expect = 4e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||||||||| | || | || || |||||||| || |||||||| ||||| Sbjct 32837 AATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATCAATCT 32778 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| || ||||| |||||||||||||| || ||||| ||| || || ||||| Sbjct 32777 TTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCAATAGT 32718 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| | ||| ||||| || || || || || || || | ||||| | ||| ||||| Sbjct 32717 ATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTG 32658 Query 172067 CAT 172069 ||| Sbjct 32657 CAT 32655 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || | | ||||| || | |||| |||||| || ||||||||| Sbjct 36502 ATTCCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCT 36443 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || || ||||| || ||||| ||||| ||||||||||| ||| Sbjct 36442 GACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGT 36383 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||||||||| || ||||| ||| ||||| ||||| || | ||| Sbjct 36382 GGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCA 36323 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || || || || || | ||||| | ||| |||||||| Sbjct 36322 ACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 116 bits (128), Expect = 7e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||| || |||||||| | | || | | || |||||||| || ||||||||| Sbjct 36691 TCTTTCTGAATGTTGTAATCTGACAGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAA 36632 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 ||||| || |||||||| || || ||||| || |||||||| || ||| ||| ||||| Sbjct 36631 ATTAACCTTTGTTGGTCTGGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTT 36572 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || ||||| | |||||| || || || |||||||| || || | || |||| Sbjct 36571 TCGATTGTATCACTGGGTTCTACCTCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACA 36512 Query 172059 AATATCTGCATT 172070 || || |||||| Sbjct 36511 AAAATTTGCATT 36500 >seq1156 Length=327524 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || |||| || | ||| | ||| | |||||| |||||| |||||| Sbjct 17721 ATACCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCT 17662 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | | || || | || || || ||||| |||||||||||||| ||||| Sbjct 17661 GATAGTGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGG 17602 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| |||||||| ||||| || | ||| Sbjct 17601 GGAATTCCTTCTTTATCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCT 17542 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||||| ||||| || || || || || ||||| | || ||||||||||| Sbjct 17541 ACTTCTAAGGTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCATTTT 17489 >seq5467 Length=66102 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | ||| | || | ||| | ||| | || || ||||| || || Sbjct 29818 ATCCCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCA 29877 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || |||| ||||||||| |||||||| | ||| || ||||| ||| Sbjct 29878 GAAAGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGT 29937 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||||||||| |||||||| | |||| Sbjct 29938 GGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCT 29997 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||||||||| ||||||| ||||| | || |||||||| Sbjct 29998 ACTTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | |||| || || | ||| ||||||| ||||| |||||||||||| || Sbjct 29593 CCACCACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAGAA 29652 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | ||| | || |||| |||||||| |||||||| | |||||||||||||||||| Sbjct 29653 AGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGA 29712 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||| ||||| || || ||||||||| || || || | ||| || Sbjct 29713 ATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTCTCAATTGTGTCACTTGGTTCCACC 29772 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || ||||| ||||| | || || | || |||||||| Sbjct 29773 TCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTGACAAAAATCTGCAT 29819 >seq1267 Length=316221 Score = 136 bits (150), Expect = 7e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 |||| || |||| ||| | ||||| ||||| ||| ||||| ||||| || | || Sbjct 206440 AGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGA 206499 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 | || ||||| ||||| |||||||||||||||||||||||||| || || ||||||||| Sbjct 206500 CCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCT 206559 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||| ||||| || ||||| || || || | || ||||| ||||| Sbjct 206560 TTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTG 206619 Query 172032 ATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || |||| ||||| | || |||||||| Sbjct 206620 ATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || | | ||||| || | || | |||||| |||||| ||||| Sbjct 206200 ATGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCA 206259 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | | || ||||| || || || |||||||| || ||||| ||||| || Sbjct 206260 GATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGA 206319 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || ||| || ||||| || || || | ||| Sbjct 206320 GGGATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCA 206379 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| ||||||||||| || || | ||||| | || |||||||| Sbjct 206380 ACTTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | | || |||||||| || | || | ||| || || ||||||||||| Sbjct 205746 ACCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGA 205805 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | | || |||| ||| || |||||||||||||| ||||| ||||| || || Sbjct 205806 CAAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGG 205865 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || |||||||| || |||||| || ||||| ||||| || | ||| || Sbjct 205866 GATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAAC 205925 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| || || ||||||||||| || | || |||| || || ||||| Sbjct 205926 TTCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 >seq629 Length=499154 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | |||| ||| || | ||| ||||||| ||| || ||| || |||||||| Sbjct 6192 CCACCACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAG 6133 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | ||| | || || | ||||||||||||||| || | |||||||||||||||||| Sbjct 6132 AGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGG 6073 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || ||||| || || ||||||||| ||| || || | || ||| Sbjct 6072 ATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACT 6013 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| |||||||| ||||| | || || | || || ||||| Sbjct 6012 TCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||||| |||| ||||| || || || || || | | ||| | || |||| ||| Sbjct 5941 ATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTCCAGTTG 5882 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 |||||||||||| || | |||||||||||||||||| || ||||| || ||||| || || Sbjct 5881 TTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTT 5822 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 ||||||||| ||| || || | || ||||| | ||| |||||||| ||||| Sbjct 5821 TGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGT 5762 Query 172046 TAATGTTTTAATGAATATCTGCAT 172069 | || || | || || ||||| Sbjct 5761 GAGGGTCTTCACAAAAATTTGCAT 5738 >seq3845 Length=110360 Score = 111 bits (122), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 39162 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 39221 |||| ||||||||| || || || || ||||| | |||||||| |||||||| |||||| Sbjct 72971 ATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCTTAAGCCAGAATATT 72912 Query 39222 GATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCT 39281 |||||||| | |||||||||||| ||||||||| ||||| |||| | || | Sbjct 72911 GATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGGCTACAACTCGCTCA 72852 Query 39282 CCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATA 39341 ||||| | | || || ||||| || | |||||||||||||| || || | | Sbjct 72851 CCAAAAGTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATCTGCTTTCTTCTTCACA 72792 Query 39342 GAAGGTATATTTTCTATAGCTTTAAA 39367 |||| | |||| || || || || Sbjct 72791 CAAGGCAAGGTTTCAATTGCATTGAA 72766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901891166639400