Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq838 107 6e-18 seq3845 95.1 4e-14 seq1632 89.7 2e-12 seq5418 84.2 6e-11 seq416 84.2 6e-11 >seq838 Length=425110 Score = 107 bits (118), Expect = 6e-18 Identities = 135/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 106902 TTTTCATAGCAAAAGACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCCT 106961 ||||||| || || |||||||| |||||||| ||||| | |||||||||| | || Sbjct 338369 TTTTCATTGCTGTAGCTGAACTCATTCCATAGAATAACTTCACTTTTTTACCATTCTTCT 338310 Query 106962 CAATTAACTT---ACCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGA 107018 | || | | ||||| | |||| |||| |||| | || ||||||||||| | Sbjct 338309 CTATCACATCTCCACCTGACTGATCAT---GTCCAGCAAGCATTCCTCCAACCATTACAA 338253 Query 107019 AATCAGCCCCGCCACCGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATCAC 107078 |||||||||| |||| || |||||||| ||||||||||| || | | ||| ||||| Sbjct 338252 AATCAGCCCCAGCACCAAAAGCTTTAGCTATATCACCAGGACAGGAACATCCTCCATCCT 338193 Query 107079 TAAT 107082 |||| Sbjct 338192 TAAT 338189 >seq3845 Length=110360 Score = 95.1 bits (104), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133073 AGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAA-AAAACAGCA 133131 || |||||||| || || ||| | || || || |||||||||||||| ||| ||| | Sbjct 70838 AGATTTGTTATTTTTCCCATTGAATACCCAGACATCTGGCAGATGTATAAGAAAGCAG-A 70896 Query 133132 AGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGC 133191 | || ||| |||||| | ||||| ||| | |||||||||| || ||||| Sbjct 70897 GGCTTCATTCTGGACTGTAGAAGAAGTTGATCTGTCCAAAGACCTGATACAGTGGGAGAA 70956 Query 133192 CCTTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGA 133251 | | | |||||| |||| ||||||||| || | || || |||||||| ||||| Sbjct 70957 TTTAAAAGAAGATGAACAACACTTTATTTCTCACATCCTGGCTTTCTTTGCTGCTAGTGA 71016 Query 133252 TGGTATTGTTCTTGAAAAT 133270 ||| |||||| ||||||| Sbjct 71017 TGGGATTGTTAATGAAAAT 71035 >seq1632 Length=265768 Score = 89.7 bits (98), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 155628 CTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGG 155687 ||||| ||||||||||| || | |||| || |||||||| || | |||| |||| Sbjct 23373 CTGTACTCTACAATCTCTGTACATAAGTTACTACATTTGATGGTTCCAAGGTTCTGCTGG 23432 Query 155688 TTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGT 155747 || || || |||||||| ||||| ||||| || |||||||| || || || || | ||| Sbjct 23433 TTTGACTTTCTGTTACAGGCATCTTTGTAGAGCATGTATGGTGTCCCAGTTTCAACCTGA 23492 Query 155748 GCGTCCAGAATCTTTAGCCAGAG-GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTC 155806 || || | ||| ||| || ||| |||| || | ||| ||||| || |||| Sbjct 23493 GCTTCTAAAATTGCATACCACAGTGTC-TGGGCTTTCACTTGTCGCTTGTACCTTTCTTC 23551 Query 155807 CGACTCATATTTCATA 155822 | ||||||| | ||| Sbjct 23552 CTTCTCATATCTTATA 23567 >seq5418 Length=65370 Score = 84.2 bits (92), Expect = 6e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133073 AGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAA-AAAACAGCA 133131 |||||||| ||||| || ||| | || || || ||||||||||| || | ||| | Sbjct 6723 AGGTTTGTAATGTTTCCCATTGAATACCCAGACATCTGGCAGATGTACAAGAGGGCAG-A 6781 Query 133132 AGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGC 133191 | || ||||||||| || ||||| || |||||||| || | |||||||| Sbjct 6782 GGCTTCATTTTGGACAGCAGAAGAAGTTGACTTATCCAAGGATGTATATGACTGGGAACA 6841 Query 133192 CCTTACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTG 133250 | | | || |||| ||| ||||||||| ||| | || || || |||||||| |||| Sbjct 6842 GTTAAAAGATGAAGAAAGACACTTTATTTCTCATG-TCTTGGCTTTCTTTGCTGCTAGTG 6900 Query 133251 ATGGTATTGTTCTTGAAAA 133269 |||| || ||| |||||| Sbjct 6901 ATGGGATAGTTAATGAAAA 6919 >seq416 Length=615642 Score = 84.2 bits (92), Expect = 6e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 448938 CATCCTGATAAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAA-TTCAAAGAGATTTC 448996 ||||| |||||||||||||| || |||| ||| ||||| ||||| |||||||| ||||| Sbjct 98166 CATCCAGATAAAAATCCAGAGAAGAAAGAAGAAGCAGA-AAGAAAGTTCAAAGAAATTTC 98224 Query 448997 TCAAGCTTATGAAATTGTAACAAAT 449021 | ||||||||||| || || || || Sbjct 98225 TGAAGCTTATGAAGTTTTATCAGAT 98249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466409354255241