Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4435 170 2e-37 seq1267 159 3e-34 seq5467 145 7e-30 seq629 129 5e-25 seq1156 120 3e-22 seq1632 93.3 4e-14 >seq4435 Length=89394 Score = 170 bits (188), Expect = 2e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| ||||||| || || || ||||| ||||| || ||||| ||| ||| Sbjct 36044 GATGCAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACTCTGGAAGTTGAACCCAG 36103 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| |||||| || || ||||| ||||||||||| || || ||||| Sbjct 36104 TGATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 36163 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||| ||||| ||||||||| |||| ||| | | | | ||||||||||| Sbjct 36164 ACAAAGATTGATTTTTGCAGGGAAACAGTTGGAAGATGGTCGCACCTTATCAGATTATAA 36223 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || ||||| |||||||| | | ||||| || ||| Sbjct 36224 TATTCAGAAGGAGTCCACACTTCACTTGGTACTTAGGTTGCGTGGTGGC 36272 Score = 152 bits (168), Expect = 5e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || ||||| || |||||||| ||| ||| Sbjct 36273 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 36332 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||| ||||| || ||||||||||| || || || ||| Sbjct 36333 GACACTATTGAAAATGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGACCAA 36392 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || |||||||| || |||||| | || ||| ||||| |||||||||||||| Sbjct 36393 CAGAGGTTAATCTTTGCAGGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAAC 36452 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || ||||| ||||| || Sbjct 36453 ATCCAGAAAGAGTCTACACTTCACTTAGT 36481 Score = 136 bits (150), Expect = 4e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || ||||| || |||||||| ||| ||| Sbjct 32655 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 32714 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||| ||||| || ||||||||||| || || |||||| Sbjct 32715 GATACTATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAA 32774 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| |||||||| | || ||| | | | | | ||||||||||| Sbjct 32775 CAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGGCGCACCTTATCAGATTATAAT 32834 Query 24884 ATTCAAAAGG 24893 ||||| |||| Sbjct 32835 ATTCAGAAGG 32844 >seq1267 Length=316221 Score = 159 bits (176), Expect = 3e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || ||||| ||||| ||||| || ||||| ||| ||| Sbjct 206429 ATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGT 206370 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || ||||||||||||||||||||||| ||||| || || Sbjct 206369 GACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 206310 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || || ||| |||| ||| |||| | || ||||| || Sbjct 206309 CAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206250 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 |||||||| || || ||||| ||||| ||| || Sbjct 206249 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTG 206217 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||||||||| || |||||||| || || ||||| || | | Sbjct 206658 GATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAG 206599 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || || || ||||||||||||||||| || || || || Sbjct 206598 TGACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCA 206539 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTA 24879 ||| | || || ||||| || |||||| |||||||| ||| |||| |||||| || Sbjct 206538 ACAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGC---ACATTGTCAGACTA 206482 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||||||| ||||| || || || | |||||| || | || || ||| Sbjct 206481 TAACATTCAAAAAGAATCTACTCTTCATCTAGTGTTGAGACTCCGTGGGGGC 206430 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || || || |||||||| || || || ||||| ||| | | Sbjct 205973 ATGCAAATCTTTGTTAAGACTCTGACAGGTAAAACCATCACCCTGGAAGTTGAACCAAGT 205914 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || || || || ||||| || || ||||| || || Sbjct 205913 GACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAGGGGATCCCTCCAGACCAG 205854 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || ||||| || || || ||||||||| |||| | |||||||||||||| Sbjct 205853 CAGAGGTTAATTTTTGCTGGCAAGCAACTGGAGGATGGAAGAACCTTGTCAGATTATAAC 205794 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||||| || ||| ||||||| || || Sbjct 205793 ATACAGAAGGAGTCGACCCTCCACTTAGTATTGAGATTGCGTGGTGG 205747 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || || ||||||||||| || || ||||| ||| | | Sbjct 206201 ATGCAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAGT 206142 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 206141 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCAG 206082 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| || || ||| |||| ||| |||| | || ||||| || Sbjct 206081 CAAAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206022 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 |||||||| || || ||||| ||||| ||| || Sbjct 206021 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTG 205989 >seq5467 Length=66102 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | ||||| ||||| || ||||| ||||| || ||||||||| | Sbjct 30050 ACCATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCT 29991 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | |||||| ||| || |||||||||||||| || || || || Sbjct 29990 AGTGATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGAC 29931 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||| | | || ||||| || ||||| ||||||||| | | | | || || || Sbjct 29930 CAGCAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGACTAC 29871 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||||||||| || || || |||| |||||||| | ||||| Sbjct 29870 AATATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGG 29821 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || || |||||||| || | || || ||| | | Sbjct 29820 GATGCAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAG 29761 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | |||||| ||||||||||||||||||||| || || || || || Sbjct 29760 TGACACAATTGAGAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCTGACCA 29701 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||| ||||| || ||||||||||||||| | | | | || |||||||| Sbjct 29700 ACAGAGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTATAA 29641 Query 24883 CATTCAAAAGGAATCGAC 24900 ||||| || ||||| || Sbjct 29640 TATTCAGAAAGAATCTAC 29623 >seq629 Length=499154 Score = 129 bits (142), Expect = 5e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || ||| | || || || || || ||||| || || | ||||| || | Sbjct 5735 ACCATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCA 5794 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| |||| | |||||| ||||||||||||||| ||||| || || || || Sbjct 5795 AGTGACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 5854 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATT 24878 ||||| | |||||||||| || ||||| ||||||||| |||| | || | || || | Sbjct 5855 CAACAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGA-ACAC-TTTCTGACT 5912 Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 | ||||| ||||| ||||| || ||||| |||| Sbjct 5913 ACAACATCCAAAAAGAATCTACCCTACATCTGGT 5946 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | || || || || || ||||| || || | ||||| || | | Sbjct 5965 GATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAG 6024 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| |||| | |||||| ||||||||||||||| ||||| || || || || || Sbjct 6025 TGACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 6084 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 ||| | |||||||||| || ||||| || ||||| | || ||| | |||||||| | Sbjct 6085 ACAGAGACTGATCTTTGCTGGTAAACAACTAGAGGA-TGGACGTACACTCTCAGATTACA 6143 Query 24882 ACATTCAAAAGGAATCGAC 24900 ||||||||||||| || || Sbjct 6144 ACATTCAAAAGGAGTCTAC 6162 >seq1156 Length=327524 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || |||||||| | |||||||| | | Sbjct 17492 ATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAGCCTAGT 17551 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||| |||||||| ||||||||||| || || |||||| Sbjct 17552 GACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAA 17611 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || ||||| || || ||||| || ||| |||| | |||||||| || Sbjct 17612 CAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAGATTACAAT 17671 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| || || || || || || |||| Sbjct 17672 ATTCAGAAAGAGTCCACTCTTCATCTTG 17699 >seq1632 Length=265768 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 139120 CTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGA 139179 ||||| || ||||| || | ||| || |||||||| ||||| || || | || || || Sbjct 23373 CTGTACTCTACAATCTCTGTACATAAGTTACTACATTTGATGGTTCCAAGGTTCTGCTGG 23432 Query 139180 TTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGT 139239 || |||| |||||| ||||||||||| ||||| || ||||| |||||||| || || Sbjct 23433 TTTGACTTTCTGTTACAGGCATCTTTGTAGAGCATGTATGGTGTCCCAGTTTCAACCTGA 23492 Query 139240 GTCTCTATAAT 139250 | |||| ||| Sbjct 23493 GCTTCTAAAAT 23503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284756470040