Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4435 206 5e-48 seq5467 203 6e-47 seq629 179 7e-40 seq1267 174 3e-38 seq9501 158 2e-33 seq2201 116 7e-21 seq994 98.7 2e-15 >seq4435 Length=89394 Score = 206 bits (228), Expect = 5e-48 Identities = 182/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | ||| |||||||| || ||||| |||||||| || |||||||| || Sbjct 36499 CCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGAC 36440 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || ||||||| |||||||| |||||||||| || ||||| ||||| || Sbjct 36439 AGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGA 36380 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| ||||| || || |||||||| ||||||||||| || ||| | ||||| ||| Sbjct 36379 ATTCCTTCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAACT 36320 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||||| ||||||||||| | || || || || |||||||| Sbjct 36319 TCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 196 bits (216), Expect = 9e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || | ||| || ||||| || || ||||||||||| || || ||||| || Sbjct 36727 CCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGAC 36668 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| || ||||| | ||| || |||||||| |||| |||||||| |||||||| Sbjct 36667 AGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGG 36608 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||||||||||||||| ||||| |||||||| || |||||| | |||||||| Sbjct 36607 ATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACC 36548 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || ||||||| ||||| ||||| || |||||| Sbjct 36547 TCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 Score = 188 bits (208), Expect = 1e-42 Identities = 170/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 |||||| | || | |||||| || ||||| ||||| ||||| || | | | || || Sbjct 36029 CAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGTACGTCCATC 35970 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| | || |||||||||||||||| |||||||||||| || || ||||| |||||||| Sbjct 35969 TTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCCCTCCTTATC 35910 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||| || || ||||| || || || || || || |||| ||||| |||||||| || || Sbjct 35909 TTGGATTTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACCTCCAAAGTGATTGT 35850 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||||| | |||||||||||||||||||||| Sbjct 35849 CTTGCCTGTTAGCGTCTTTACAAATATCTGCATT 35816 Score = 179 bits (198), Expect = 7e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || || || || ||||| ||||||||||| |||| | | ||| ||| Sbjct 36256 AGTACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTGATAAGGTGCGACCATCT 36197 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||||| || ||||| || | ||||||||||||||| || |||||||| |||||| Sbjct 36196 TCCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCT 36137 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 ||||| || ||||||||||||||||| |||||| | ||||| ||||||| ||| || || Sbjct 36136 TGAATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTTCAACTTCCAGAGTAATTGTT 36077 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | || || ||||| || ||||| Sbjct 36076 TTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 168 bits (186), Expect = 1e-36 Identities = 150/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| ||||||||||| |||| | | || ||||||| |||||| || ||||| || Sbjct 32842 TTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATC 32783 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | ||||||||||||||| || |||||||| ||||| || || |||||||| || |||||| Sbjct 32782 AATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCA 32723 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || |||||| | ||||| ||||| | ||||| ||||||||||| | || || || || Sbjct 32722 ATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAG 32663 Query 82803 ATCTGCAT 82810 |||||||| Sbjct 32662 ATCTGCAT 32655 >seq5467 Length=66102 Score = 203 bits (224), Expect = 6e-47 Identities = 181/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| |||||||| | || ||||| ||||| || || ||||| || ||||| Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || |||||||| || ||||| || |||||||| || ||||| || Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || |||||||| |||||||||||||| ||||| |||||| ||||||||||| Sbjct 29941 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACT 30000 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || || ||||| || | || || ||||| |||||||| Sbjct 30001 TCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 |||| ||||||||||||||| |||||||||||||| || | | || || || || ||| Sbjct 29617 TGCAAAGTAGATTCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCATCCTCCAGCTGT 29676 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||| || ||||| ||||| || || || || ||||| || ||||| |||||| Sbjct 29677 TTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTTT 29736 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||||||||| ||||| || ||| | ||||| || |||||||| || || || || || Sbjct 29737 GCTTTTACATTCTCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAGTTTTTCCAGTG 29796 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 29797 AGGGTCTTGACAAAAATCTGCAT 29819 >seq629 Length=499154 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| | | |||| | || || ||||||||||| || || || || ||||| Sbjct 5964 CCTCCCCTCAGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAA 5905 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| ||| || || |||||||| ||||||||||| ||||| ||||| || || || Sbjct 5904 AGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGG 5845 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||||||||||||||| || || || ||| | || || ||| Sbjct 5844 ATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACT 5785 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || || || || | ||||| ||||| || ||||| Sbjct 5784 TCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 |||| |||||| || || || || || ||||| || || | | || || ||||||||| Sbjct 6168 TGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGTACGTCCATCCTCTAGTTGT 6109 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| ||||| ||||| || || || || |||||||| ||||| |||||| Sbjct 6108 TTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTT 6049 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||||||||| || || || ||| | || || ||||||||||| || || || || || Sbjct 6048 GCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTG 5989 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| || ||||| Sbjct 5988 AGGGTCTTCACAAAAATTTGCAT 5966 >seq1267 Length=316221 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || |||||||||||||| || || ||||| || || | | | ||| || || Sbjct 206449 ACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGACCATCCTCC 206508 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | |||||||||||||| |||| ||| ||||| ||||| || |||||||| || |||||| Sbjct 206509 AACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 206568 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || || || ||||||||||| || ||| |||| || ||||||| ||| || || || Sbjct 206569 ATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTGATAGTTTTT 206628 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | ||| |||||||| |||||||| Sbjct 206629 CCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | ||| |||||||| || || || ||||| || ||||| ||||||||| Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | |||| || ||||| | || ||||| ||||| || | || || || |||||||| Sbjct 206263 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 206322 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||| ||||| || || ||||||||||| || ||| | ||||| ||| Sbjct 206323 ATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACT 206382 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || ||||| || | || || ||||| |||||||| Sbjct 206383 TCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | ||| | || |||||||| || || || || |||||||| |||||||| || Sbjct 205746 ACCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGA 205805 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | |||| || || || ||||| || |||||||| |||| || || || |||||||| Sbjct 205806 CAAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGG 205865 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || ||||| ||||| || || || ||||||||||| || ||| | ||||| || Sbjct 205866 GATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAAC 205925 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || || ||||||| ||||| ||||| || ||||| Sbjct 205926 TTCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 >seq9501 Length=22347 Score = 158 bits (174), Expect = 2e-33 Identities = 243/344 (71%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 143948 AGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACT 144007 |||| ||||||| |||| |||||| ||||||| || ||||| |||||||| || || Sbjct 15113 AGATGAAGATGAATGGAGAACTTGGCAAAAAATGAGTGACCCAGTGTTGCATATTGAGCT 15054 Query 144008 TAGGAGATGGGCTGATGTTTTTATTATAGCGCC-CTTAACAGCAAATACGTTAGCAAAAA 144066 || ||||||| ||||| | | || | || ||| | || || || | || |||| Sbjct 15053 GAGACGATGGGCCGATGTCCTCGTGGTATCTCCTCTTGAT-GCTAACACCATGGCCAAAA 14995 Query 144067 TAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATA 144126 || || ||| || || |||||| | |||||| | |||| || || |||||||| || | Sbjct 14994 TAAGCAGTGGCATTTGTGATAATCTTTTAACATGTGTAGTGAGGGCATGGGATATGAAGA 14935 Query 144127 AACCTCTTATTTTTTGCCCCGCTATGAATACCCTTATGTGGGAACATCCTATTACAGAAA 144186 |||| || | |||||||| |||||||| |||| ||||||||| || || || |||| | Sbjct 14934 AACCACTGGTGTTTTGCCCTGCTATGAACACCCATATGTGGGATCACCCGATAACAGTCA 14875 Query 144187 AACATATAGATACTTTAAAACATATGGGTTTCATAGAAATAGAATGTATAGaaaaaaaaC 144246 || || || | || ||| | | || | |||||| | ||| ||| || || Sbjct 14874 CCCAAATCGAAAAATTGAAAGAACTTGGATACATAGAGGTGCCTTGTGTAGCCAAGAAGT 14815 Query 144247 TAGCCTGTGGAGACGTAGGAAATGGTGCTATGGCAGAAGTTACA 144290 | || ||||| || || ||||||||||||| |||||| || Sbjct 14814 TGGCATGTGGTGATAGTGGTTATGGTGCTATGGCTGAAGTTCCA 14771 >seq2201 Length=213340 Score = 116 bits (128), Expect = 7e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || | ||||||||||| ||||||||||| ||||| || || |||||||| Sbjct 161614 ACCACCTCTTAATCTTAGAACTAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGA 161555 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| ||| || ||||| || || |||||||||||||| ||||| || || || ||||| Sbjct 161554 CAGAGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 161495 Query 82703 TATTCCT 82709 || ||| Sbjct 161494 AATACCT 161488 >seq994 Length=361151 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 53858 TTTGTAACCGTGCACCATTTTTTAGATTTTGTATCGTAGCAGCCCATAAGAAAACTGGAT 53917 |||||||| || |||||||||||| | |||||| || ||||| ||||| | || Sbjct 158414 TTTGTAACAGTACACCATTTTTTACTAGCAGGATCGTAACATCCCATCAGAAATATTGAC 158473 Query 53918 AGAATACCAGATTTATTACCTTTTCCGTAATAAGCACCCAGAACTACTAGATCAGCTTTA 53977 | || ||| |||||| || |||| |||| || || ||||| || ||||||||| | Sbjct 158474 ATCATTCCACCTTTATTTCCAGTTCCAAAATATGCTCCAAGAACAACAAGATCAGCTGAA 158533 Query 53978 TCTGCCATAATACAACCATCTAAGTAGTCtttttttATTTTCAACCA 54024 |||||||| | | | |||| ||| |||||||| ||||| | ||| Sbjct 158534 TCTGCCATTGCTCCATCTTCTAGGTAATCTTTTTTAATTTTTAGCCA 158580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978219441282827