Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq9501 131 3e-25 seq994 107 3e-18 seq4435 93.3 8e-14 >seq9501 Length=22347 Score = 131 bits (144), Expect = 3e-25 Identities = 237/344 (69%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 142967 AGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACT 143026 |||| ||||||| |||| |||||| ||||||| || || || |||||||| || || Sbjct 15113 AGATGAAGATGAATGGAGAACTTGGCAAAAAATGAGTGACCCAGTGTTGCATATTGAGCT 15054 Query 143027 TAGGAGATGGGCGGATGTTTTTCTTATAGCGCC-CTTAACGGCAAATACGTTAGCAAAAA 143085 || ||||||| ||||| | | || | || ||| | | | || || | || |||| Sbjct 15053 GAGACGATGGGCCGATGTCCTCGTGGTATCTCCTCTTGATG-CTAACACCATGGCCAAAA 14995 Query 143086 TAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATA 143145 || || || || || |||||| | |||||| | |||| || || |||||||| || | Sbjct 14994 TAAGCAGTGGCATTTGTGATAATCTTTTAACATGTGTAGTGAGGGCATGGGATATGAAGA 14935 Query 143146 AACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAA 143205 |||| || | ||||| || |||||||| | || ||||||||| || || || |||| | Sbjct 14934 AACCACTGGTGTTTTGCCCTGCTATGAACACCCATATGTGGGATCACCCGATAACAGTCA 14875 Query 143206 AACATATAGATGCTTTAAAACATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaC 143265 || || || || ||| | | || | |||||| | || ||| || || Sbjct 14874 CCCAAATCGAAAAATTGAAAGAACTTGGATACATAGAGGTGCCTTGTGTAGCCAAGAAGT 14815 Query 143266 TAGCCTGCGGAGACATAGGAAATGGTGCTATGGCAGAAGTTACA 143309 | || || || || | || ||||||||||||| |||||| || Sbjct 14814 TGGCATGTGGTGATAGTGGTTATGGTGCTATGGCTGAAGTTCCA 14771 >seq994 Length=361151 Score = 107 bits (118), Expect = 3e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 52110 TTTGTAACCGTGCACCATTTTTTAGATTTTGTATCGTAGCATCCCATAAGAAAACTGGAT 52169 |||||||| || |||||||||||| | |||||| |||||||| ||||| | || Sbjct 158414 TTTGTAACAGTACACCATTTTTTACTAGCAGGATCGTAACATCCCATCAGAAATATTGAC 158473 Query 52170 AGAATACCAGATTTATTACCTTTTCCGTAATAAGCACCCAGAACTACTAGATCAGCTTTA 52229 | || ||| |||||| || |||| |||| || || ||||| || ||||||||| | Sbjct 158474 ATCATTCCACCTTTATTTCCAGTTCCAAAATATGCTCCAAGAACAACAAGATCAGCTGAA 158533 Query 52230 TCTGCCATAATACAACCATCTAAGTAGTCtttttttATTTTCAGCCA 52276 |||||||| | | | |||| ||| |||||||| ||||| ||||| Sbjct 158534 TCTGCCATTGCTCCATCTTCTAGGTAATCTTTTTTAATTTTTAGCCA 158580 >seq4435 Length=89394 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/133 (74%), Gaps = 11/133 (8%) Strand=Plus/Minus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC-----------AAAG 81701 |||||||| ||||||||||| |||| || | || ||||| ||| ||| Sbjct 36235 TCCTTCTGAATATTATAATCTGATAAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAA 36176 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 || | |||||||||| |||| | ||| |||| ||||||||||| || ||||||| |||| Sbjct 36175 ATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTT 36116 Query 81762 TCAATCGTATTAC 81774 ||||| |||| || Sbjct 36115 TCAATAGTATCAC 36103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900172549896480