Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1267 105 6e-18 seq629 96.9 3e-15 seq5467 89.7 5e-13 seq4435 82.4 7e-11 >seq1267 Length=316221 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || |||||||| || ||||||||||| | || || || | |||||| || Sbjct 206233 GTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATCTTCCAACTGCTTTCCT 206292 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| | || ||||||||| |||||||| ||||| ||||| |||||| ||| Sbjct 206293 GCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTC 206352 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| |||| || || || | ||| | |||||||||||| || ||| Sbjct 206353 ACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTAATGGTTTTGCCGGTAAGGGTT 206412 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 206413 TTCACAAAGATCTGCATG 206430 >seq629 Length=499154 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| ||| || ||||| || || ||||| || | || ||| | ||||| || | Sbjct 5941 ATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCA-TCCTCCAGTT 5883 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || || | || || | ||| ||||| || ||||||||||||||||| ||||| Sbjct 5882 GTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCT 5823 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || || | | ||| | ||||| | |||||||| || | |||| |||||| || | Sbjct 5822 TTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAG 5763 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGG 133662 | || || || || ||||| ||||||| Sbjct 5762 TGAGGGTCTTCACAAAAATTTGCATGG 5736 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||| || || || |||||||| | ||| ||| ||||| || || || | Sbjct 6162 GTAGACTCCTTTTGAATGTTGTAATCTGAGA--GTGTACGTCCATCCTCTAGTTGTTTAC 6105 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || | ||| ||||| || ||||||||||||||||| ||||||| | Sbjct 6104 CAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTT 6045 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | |||||||| || | |||| |||||| || || || | Sbjct 6044 TTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGG 5985 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||| ||||| Sbjct 5984 TCTTCACAAAAATTTGCAT 5966 >seq5467 Length=66102 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| ||||| ||||| | || | | | ||||| ||||| || || Sbjct 29623 GTAGATTCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCA-TCCTCCAGCTGTTTACC 29681 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || | ||| ||||| || || |||||||| ||||| ||||||| || Sbjct 29682 TGCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTT 29741 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | || ||||| || | |||| ||||| || || || || Sbjct 29742 TACATTCTCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGT 29801 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 29802 CTTGACAAAAATCTGCAT 29819 >seq4435 Length=89394 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || || ||||| || || | || || | ||| || || Sbjct 36469 GTAGACTCTTTCTGGATGTTATAATCTGACAGAGTTCTCCCATCTTCTAACTGTTTTCCT 36410 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 || | || | || ||| ||||| || || || ||||| || || ||| |||||| || Sbjct 36409 GCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCTTTATCCTGGAT-TTTTGCTTT 36351 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| |||| || || |||| ||| | || ||||| || ||||| Sbjct 36350 CACATTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGT 36291 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| ||||| ||||||||| Sbjct 36290 TTTGACGAAGATCTGCATG 36272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481687778731320