Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1267 138 7e-28 seq5467 122 6e-23 seq1156 104 2e-17 seq629 98.7 7e-16 seq4435 93.3 3e-14 >seq1267 Length=316221 Score = 138 bits (152), Expect = 7e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||| | ||| ||||| |||||||| ||||| || || || | |||||| | || Sbjct 206446 AACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGACCATCC 206505 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 ||||| |||||||| |||||||| || | ||| || ||| | || | ||||||||||| Sbjct 206506 TCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCT 206565 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| | | |||| || | |||||| || | ||||| || | ||||| || Sbjct 206566 TGAATTTT-GGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTGATAGT 206624 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||||| ||||||||||||||||||||| Sbjct 206625 TTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| | || || || || || || ||| || |||||||| ||||| || Sbjct 205746 ACCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGA 205805 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || |||| ||| || || |||||||| || | |||||| ||| | || Sbjct 205806 CAAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGG 205865 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | || ||||| || |||||| |||| ||| ||| ||||| |||| ||| | Sbjct 205866 GATCCCCTCTTTATCCTGAATTTTAGCCTTCA-CATTTTCAATAGTGTCACTTGGTTCAA 205924 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||||||||| | || || |||||||| ||||| Sbjct 205925 CTTCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| || || || || ||||||||| || |||||||| || | || | | | || || Sbjct 206220 CACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATCTTC 206279 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 ||| || ||||| ||||||||||| | |||||| ||| | || | ||||||||||| Sbjct 206280 CAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTG 206339 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || ||| |||| || | ||||| || | ||| || || | || || |||| Sbjct 206340 GATCTTAGCCTTC-ACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTAATGGTTT 206398 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| |||||||||||||| Sbjct 206399 TGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| || || || || ||||||||| || |||||||| || | || | | | || || Sbjct 205992 CACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATCTTC 206051 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 ||| || ||||| ||||||||||| | ||||| ||| | || | || ||||| || Sbjct 206052 CAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGGATCCCCTCTTTATCCTG 206111 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| | | || | || | ||||| |||| ||| || || | ||||| |||| Sbjct 206112 GATTTT-AGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTGATAGTTT 206170 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||| | || || |||||||||||||| Sbjct 206171 TACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 >seq5467 Length=66102 Score = 122 bits (134), Expect = 6e-23 Identities = 175/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||||||| || | |||| ||| ||||| || ||||| || Sbjct 29809 AAAATCTGCATCCCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATA 29868 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || || || ||| | || |||| |||||| || |||||||| | | ||| Sbjct 29869 TTGTAGTCAGAAAGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGC 29928 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | |||||||||||| |||||| || || |||| || | || || Sbjct 29929 TGGTCTGGTGGAATACCTTCTTTGTCTTGAATTTT-TGCTTTTACATTCTCAATAGTATC 29987 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||| || || | || || ||||| || |||| ||||| |||||||||||||| Sbjct 29988 ACTAGGTTCTACTTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Query 33750 AGT 33752 || Sbjct 30048 GGT 30050 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || || || ||||| || || || ||| | || |||| ||||| || |||||| Sbjct 29629 TCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAA 29688 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | ||| || || | || | ||||||||||| || || || || |||| Sbjct 29689 ATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTT-TGCTTTTACATT 29747 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| |||| |||||| || | ||||| ||||| || || | || || || Sbjct 29748 CTCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTGAC 29807 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 29808 AAAAATCTGCAT 29819 >seq1156 Length=327524 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| || | ||| |||||| |||||| || || |||||||| || Sbjct 17719 ACCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGA 17660 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || || | || ||||| ||||| || || | ||| ||||| | || Sbjct 17659 TAGTGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGG 17600 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | |||||||| || ||||| || | |||| ||| ||||| || | || | Sbjct 17599 AATTCCTTCTTTATCTTGGATTTT-TGCCTTTACATTCTCAATAGTGTCACTAGGCTCTA 17541 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || ||||| || |||||||||||||||||||| Sbjct 17540 CTTCTAAGGTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCAT 17492 >seq629 Length=499154 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || | ||| || | ||| | ||| ||| ||||| ||||||||||| ||| Sbjct 6192 CCACCACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAG 6133 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| ||| | || || | |||||| || ||||| |||| | ||| || || | || Sbjct 6132 AGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGG 6073 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || || |||| || | ||||| |||| ||||| Sbjct 6072 ATGCCTTCCTTGTCTTGGATCTT-TGCTTTTACATTCTCTATTGTGTCACTTGGCTCCAC 6014 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | || || ||||| || ||||| Sbjct 6013 TTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 >seq4435 Length=89394 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||| | | ||||| || || ||| ||| || || || || ||||| || Sbjct 36271 CCACCACGCAACCTAAGTACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTGAT 36212 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || ||||| ||||| || ||||||||||| | || |||||| | || Sbjct 36211 AAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGA 36152 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || |||||| | || |||| || | || || || | ||| || Sbjct 36151 ATTCCTTCTTTATCTTGAATTTT-GGCTTTTACATTTTCAATAGTATCACTGGGTTCAAC 36093 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || || | ||||| |||||||| ||||| Sbjct 36092 TTCCAGAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || ||||| ||||| || || || | | || || || |||||||| ||||| Sbjct 36464 CTCTTTCTGGATGTTATAATCTGACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAA 36405 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || || | ||| || ||| | || | |||||||| || ||||| ||||| ||| Sbjct 36404 GATTAACCTCTGTTGGTCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCA-CAT 36346 Query 33678 AGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| ||||| || | ||| || || | || || || || ||||| | ||||| | Sbjct 36345 TTTCAATAGTGTCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGA 36286 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 36285 CGAAGATCTGCAT 36273 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||||| || ||||||||||| || || || | | | || ||| Sbjct 36709 ACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTTCTTCCATCTTCC 36650 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| || || |||||||| || | || || ||| | || | || || || || | Sbjct 36649 AATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCCTCCTTATCTTGA 36590 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || |||| |||| || | || || || | ||| || |||| ||||| ||||| Sbjct 36589 ATCTTAGCTTTC-ACATTTTCGATTGTATCACTGGGTTCTACCTCAAGGGTGATGGTTTT 36531 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| | || || ||||| || ||||| Sbjct 36530 TCCTGTCAGAGTCTTAACAAAAATTTGCAT 36501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327555084298560