Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1267 145 2e-29 seq4435 138 3e-27 seq5467 127 5e-24 seq1156 118 2e-21 seq629 113 1e-19 seq2201 93.3 1e-13 >seq1267 Length=316221 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||||| ||||||||||| |||||| |||||||||| | |||| Sbjct 206654 CAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGTGAC 206595 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || |||||||| |||||||||||| || ||| || Sbjct 206594 ACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAACAG 206535 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || ||||| |||||||| ||||| | || ||| | || || ||| | Sbjct 206534 AGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTATAACATT 206475 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||||||||| || || |||||||| || Sbjct 206474 CAAAAAGAATCTACTCTTCATCTAGTGTTGAGACTCCG 206437 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| || || | ||||| ||| |||| Sbjct 206426 CAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGTGAC 206367 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| ||||| ||||| ||||||||||| || ||| || Sbjct 206366 ACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAGCAG 206307 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || ||||||||||||||||||||||| ||||| | |||||||| | Sbjct 206306 AGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAATATT 206247 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || |||||||| || |||||| | || |||| || Sbjct 206246 CAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCT 206212 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| ||||| ||||| ||||||| ||| |||| Sbjct 206198 CAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAGTGAC 206139 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| || || || || ||||| || || || ||| ||| Sbjct 206138 ACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCAGCAA 206079 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || ||||||||||||||||||||||| ||||| | |||||||| | Sbjct 206078 AGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAATATT 206019 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || |||||||| || |||||| | || |||| || Sbjct 206018 CAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCT 205984 >seq4435 Length=89394 Score = 138 bits (152), Expect = 3e-27 Identities = 170/229 (74%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 206163 TAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA 206222 ||||||| ||||||||| || ||||| ||||| || || ||||||||||| || || Sbjct 35813 TAAAATG---CAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGGTAGA 35869 Query 206223 AAGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGC 206281 | ||||| | || || ||||| ||| || ||||| || || |||||| | Sbjct 35870 GCCTAGCGACACCATAGAGAACGTCAAAGCTAAA-ATCCAAGATAAGGAGGGAATTCCAC 35928 Query 206282 CGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCG 206341 | || |||||| | ||||| || ||||||||||||||||||||| | || ||| | | Sbjct 35929 CTGATCAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAG 35988 Query 206342 ATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| | ||||| ||||||||| | || || ||| |||||||||| Sbjct 35989 ATTACAATATTCAGAAGGAGTCTACTTTACATCTGGTTCTGAGACTTCG 36037 Score = 122 bits (134), Expect = 2e-22 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || ||||| || || || || | ||||| ||| |||| Sbjct 36276 CAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGTGAC 36335 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||||||| || || || |||||||||||| || ||| || Sbjct 36336 ACTATTGAAAATGTGAAAGCAAAA-ATCCAGGATAAAGAAGGAATTCCACCAGACCAACA 36394 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || ||||| ||||| |||||||| || ||| || | ||||| ||| | Sbjct 36395 GAGGTTAATCTTTGCAGGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAACAT 36454 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||||||||||||| |||||| | || |||| || Sbjct 36455 CCAGAAAGAGTCTACACTTCACTTAGTCCTGAGGCT 36490 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| ||||| | || || ||| ||| ||| ||||| Sbjct 36516 AAGACTCTGACAGGAAAAACCATCACCCTTGAGGTAGAACCCAGTGATACAATCGAAAAT 36575 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||||||||||| || || ||||| || ||| ||||| | || || Sbjct 36576 GTGAAAGC-TAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCAACAAAGGTTAATTTT 36634 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| |||||||||||||| || || | ||||||||| | |||||||| || Sbjct 36635 TGCTGGGAAGCAATTGGAAGATGGAAGAACCCTGTCAGATTACAACATTCAGAAAGAATC 36694 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || ||||||| || Sbjct 36695 AACCCTTCACTTGGTACTGAGACTGCG 36721 Score = 102 bits (112), Expect = 2e-16 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || ||| ||||||| ||| ||| || | ||| Sbjct 36060 AAAACACTTACTGGAAAAACAATTACTCTGGAAGTTGAACCCAGTGATACTATTGAAAAT 36119 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| |||||||| |||||||||||| || || |||||| | || || Sbjct 36120 GTAAAAGCCAAA-ATTCAAGATAAAGAAGGAATTCCACCAGATCAACAAAGATTGATTTT 36178 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || |||||||||||||| | || || | ||||| || | ||||| ||||| Sbjct 36179 TGCAGGGAAACAGTTGGAAGATGGTCGCACCTTATCAGATTATAATATTCAGAAGGAGTC 36238 Query 206364 TACTCTTCAC 206373 || |||||| Sbjct 36239 CACACTTCAC 36248 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||| ||| || || | ||||||||| ||||| | ||| || || | ||| || Sbjct 36037 CGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGTA 35978 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||| ||||||||| || ||||| | | ||||||| Sbjct 35977 CGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGA 35933 >seq5467 Length=66102 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| |||||||| ||||||||||| |||||| |||| Sbjct 29816 CAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAGTGAC 29757 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || ||||| |||||| ||||| |||||||| ||| || ||| || Sbjct 29756 ACAATTGAGAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCTGACCAACAG 29697 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || || || || || ||| |||| |||||| |||| | | ||||| || | Sbjct 29696 AGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTATAATATT 29637 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| |||||| | || ||||| | ||||| || Sbjct 29636 CAGAAAGAATCTACTTTGCATCTTGTCCTAAGACTGCG 29599 >seq1156 Length=327524 Score = 118 bits (130), Expect = 2e-21 Identities = 156/216 (72%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | |||||||| || || || || ||||| || Sbjct 17489 AAAATG---CAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAG 17545 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 | |||||| | || |||||| ||| || ||||| |||||||||||| || Sbjct 17546 CCTAGTGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCT 17605 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || ||| | || || || ||||||||| | ||||||||||| || | | ||| Sbjct 17606 GATCAACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAGAT 17665 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| | ||||||||||| |||||||| |||||| Sbjct 17666 TACAATATTCAGAAAGAGTCCACTCTTCATCTTGTT 17701 >seq629 Length=499154 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || || ||||| |||||||| ||||||||||||||||| ||| ||||||| | || Sbjct 5981 AAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAG---TGACACAATAGAG 6037 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 ||||| |||||| ||||| || ||||| || || ||| || ||||| ||| Sbjct 6038 AATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAACAGAGACTGATC 6097 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || || || || | || |||||| | || | | ||||||||| | || || ||| Sbjct 6098 TTTGCTGGTAAACAACTAGAGGATGGACGTACACTCTCAGATTACAACATTCAAAAGGAG 6157 Query 206362 TCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| | || ||||| || ||||| || Sbjct 6158 TCTACTTTGCATCTTGTCTTAAGACTGCG 6186 Score = 102 bits (112), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || || ||||| |||||||| ||||||||||||||||| ||| ||||||| | || Sbjct 5753 AAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAG---TGACACAATAGAG 5809 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 ||||| |||||| ||||| || ||||| || || ||| || ||||| ||| Sbjct 5810 AATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAACAGAGACTGATC 5869 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || || || || |||| ||||| | || | | || |||||| |||| ||||| Sbjct 5870 TTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTGACTACAACATCCAAAAAGAA 5929 Query 206362 TCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| || || || ||| ||| || Sbjct 5930 TCTACCCTACATCTGGTTCCGAGGCT 5955 >seq2201 Length=213340 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || ||||| ||||| || ||||||||| |||||||||| | ||| || | ||||||||| Sbjct 161507 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACTCTGTCTGATTACAAC 161566 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||||| || |||||||||||| | ||| | ||| Sbjct 161567 ATCCAGAAGGAATCTACTCTTCACTTAGTTCTAAGA 161602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177478157737353