Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4435 104 2e-17 seq629 93.3 4e-14 seq1267 89.7 5e-13 >seq4435 Length=89394 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||| || || || || | | |||||| | |||||| || | | Sbjct 36466 GACTCTTTCTGGATGTTATAATCTGACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCA 36407 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||||| | |||||| ||||| || || ||||||||||| |||||| ||||| Sbjct 36406 AAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACA 36347 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | || || ||||||| || | || || || || |||||||| Sbjct 36346 TTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTG 36287 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 36286 ACGAAGATCTGCATG 36272 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995 || ||||| || || || | ||| ||| |||||| | ||||| || | | | || Sbjct 32842 TTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATC 32783 Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055 | | ||||||||||| || || ||||||||||| |||||| ||||| | ||| Sbjct 32782 AATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCA 32723 Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | |||||| | || || ||||||| || | || || || || |||||||| | ||| Sbjct 32722 ATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAG 32663 Query 132116 ATCTGCATG 132124 ||||||||| Sbjct 32662 ATCTGCATG 32654 >seq629 Length=499154 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| ||||| | | || |||||||| ||||||||||| | || || ||| || Sbjct 5947 AACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTC 5888 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || |||||||| | | |||| || | |||||| || || || |||||||| || || Sbjct 5887 CAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTG 5828 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| ||| | | || | || || | ||||||||||| | || | ||||| Sbjct 5827 GATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTT 5768 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || || || | ||||| |||||| Sbjct 5767 TCCAGTGAGGGTCTTCACAAAAATTTGCATG 5737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||||||| || | ||||| ||| || || |||||||| | | Sbjct 6159 GACTCCTTTTGAATGTTGTAATCTGAGAGTGTACGTCCATCCTCTAGTTGTTTACCAGCA 6100 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | |||||| || || || |||||||| || || || ||| ||| | Sbjct 6099 AAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACA 6040 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||||||||| | || | ||||| ||||| || || || Sbjct 6039 TTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTC 5980 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 5979 ACAAAAATTTGCAT 5966 >seq1267 Length=316221 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||| ||||| || || || ||| || | |||||| || | | Sbjct 206464 GATTCTTTTTGAATGTTATAGTCTGACAATGTGCGACCATCCTCCAACTGTTTTCCAGCA 206523 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| | |||||| ||||| || || |||||||| || |||||| || | Sbjct 206524 AAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACA 206583 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||||||||| | || | ||||| || || || |||||| Sbjct 206584 TTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTT 206643 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 206644 ACAAAGATCTGCAT 206657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474902590551480