Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5467 131 1e-25 seq1267 105 6e-18 seq1156 100 3e-16 seq629 82.4 7e-11 >seq5467 Length=66102 Score = 131 bits (144), Expect = 1e-25 Identities = 176/244 (72%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 25159 TTTTCAATTAAA-CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGA 25217 |||| |||| | || |||||| | ||||| ||||| |||| || ||| | || || Sbjct 30064 TTTTAGATTAGATCACCATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTC 30005 Query 25218 TCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGG 25277 | ||||| ||| | | |||||||| ||| | |||||| ||||||| || ||||| | Sbjct 30004 TGGAAGTAGAACCTAGTGATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAG 29945 Query 25278 GTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 25337 |||| || || || |||||||||||||||| | || |||||||| || |||| | | Sbjct 29944 GTATTCCACCAGACCAGCAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGA 29885 Query 25338 ATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAG 25397 | || |||||||| ||||| ||||| || ||||| | || | ||||||||| Sbjct 29884 CCCTTTCTGACTACAATATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAG 29825 Query 25398 GAGG 25401 |||| Sbjct 29824 GAGG 29821 >seq1267 Length=316221 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || | || || ||| | ||||| | ||||| ||| | | Sbjct 206202 CATGCAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAG 206143 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | ||||| ||||| ||||||||||| || || || || || Sbjct 206142 TGACACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCA 206083 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | |||| | || || || | ||||||| |||| | | |||||||| Sbjct 206082 GCAAAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAA 206023 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||| || || |||| |||||| | || | |||||||| Sbjct 206022 TATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 205975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || | || || ||| | ||||| | ||||| ||| | | Sbjct 205974 CATGCAAATCTTTGTTAAGACTCTGACAGGTAAAACCATCACCCTGGAAGTTGAACCAAG 205915 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || |||||| ||||||||||| || || || || || Sbjct 205914 TGACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAGGGGATCCCTCCAGACCA 205855 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| || | |||| | ||||| ||||| || |||| |||| ||||| ||||| Sbjct 205854 GCAGAGGTTAATTTTTGCTGGCAAGCAACTGGAGGATGGAAGAACCTTGTCA--GATTAT 205797 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || || || ||| | || ||||| || |||||| | || || Sbjct 205796 AACATACAGAAGGAGTCGACCCTCCACTTAGTATTGAGATTGCGTGGTGG 205747 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | ||||| ||| | || || | ||||| ||| ||| Sbjct 206430 CATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAG 206371 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || || || ||||| || || || || || || Sbjct 206370 TGACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 206311 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | |||| | || || || | ||||||| |||| | | |||||||| Sbjct 206310 GCAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAA 206251 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||| || || |||| |||||| | || | |||||||| Sbjct 206250 TATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 206203 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||| |||| |||||| | ||||| | ||||| || | | Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || |||||| || ||||| || || || || || || Sbjct 206597 GACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAA 206538 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | |||| | || ||||| | || |||| | | | |||||| | || | Sbjct 206537 CAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAG--ACTATA 206480 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 | |||||||||||||| || ||||| ||||||| ||| Sbjct 206479 ACATTCAAAAAGAATCTACTCTTCATCTAGTGTTGAGA 206442 >seq1156 Length=327524 Score = 100 bits (110), Expect = 3e-16 Identities = 178/256 (70%), Gaps = 9/256 (4%) Strand=Plus/Plus Query 25125 TTTAAGTCTTTGAACACTAAAATTATATAAGTAGTTTTCAATTAAACAACATGCAAGTGT 25184 ||| || |||| || ||| |||| ||| | ||||| || ||| ||||| | | Sbjct 17447 TTTGAGGCTTTTAAATCTATAATTTTATTTTTC--TTTCAGTT---CAAAATGCAGATCT 17501 Query 25185 TTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCG 25244 |||||||||| || || ||||| | || || | ||||| || | | || ||||| | Sbjct 17502 TTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAGCCTAGTGACACTATTG 17561 Query 25245 AGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCA 25304 || | ||||| |||||| |||||||| || || || || ||||| || ||| | | Sbjct 17562 AGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAACAGAGATTAA 17621 Query 25305 TTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATTACAATATTCAAAA 25362 | | | || || || || ||||||| ||| | | ||| |||||||||||||| || Sbjct 17622 TATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCA--GATTACAATATTCAGAA 17679 Query 25363 AGAATCCACCATTCAT 25378 ||| ||||| ||||| Sbjct 17680 AGAGTCCACTCTTCAT 17695 >seq629 Length=499154 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || ||||||| | ||||| || || | || |||||| | ||||| | ||||| || || Sbjct 5734 CACCATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGA-GC 5792 Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 ||| || || || ||| | |||||| ||| || || || || || || || || | Sbjct 5793 CAAGTGACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTG 5852 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 | || || ||||| || | | || |||||||| || |||| | ||| | || | Sbjct 5853 ACCAACAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTGACT 5912 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| || ||||||||||| ||| | ||| | || || |||| ||||| Sbjct 5913 ACAACATCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAGGGGAGG 5964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443498775521760