Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq4435 105 5e-18 seq5467 95.1 1e-14 seq1267 95.1 1e-14 seq629 84.2 2e-11 >seq4435 Length=89394 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||||||||| || |||| || || ||||| ||| | || ||||||| | Sbjct 36500 AATGCAAATTTTTGTTAAGACTCTGACAGGAAAAACCATCACCCTTGAGGTAGAACCCAG 36559 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | |||||| || ||| || || || || | || || || Sbjct 36560 TGATACAATCGAAAATGTGAAAGCTAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCA 36619 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||||| | |||| ||| || || ||||| |||||| | ||| || |||||||| Sbjct 36620 ACAAAGGTTAATTTTTGCTGGGAAGCAATTGGAAGATGGAAGAACCCTGTCAGATTACAA 36679 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| || |||||||| || || || || ||| |||| | || ||||| Sbjct 36680 CATTCAGAAAGAATCAACCCTTCACTTGGTACTGAGACTGCGTGGAGG 36727 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||||||| | ||||| || || ||||| ||||| |||||| | Sbjct 36045 ATGCAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACTCTGGAAGTTGAACCCAGT 36104 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 36105 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 36164 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || ||||| || |||||| | || | ||||| || Sbjct 36165 CAAAGATTGATTTTTGCAGGGAAACAGTTGGAAGATGGTCGCACCTTATCAGATTATAAT 36224 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || || || ||||| || || ||| | ||||| || || || Sbjct 36225 ATTCAGAAGGAGTCCACACTTCACTTGGTACTTAGGTTGCGTGGTGG 36271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || ||||| | || |||||||| || ||| | ||| |||||| | Sbjct 32655 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 32714 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | |||||| |||||| || |||||||| | || |||||| Sbjct 32715 GATACTATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAA 32774 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT 106415 ||||| | |||| ||| || ||||||||||||||| Sbjct 32775 CAAAGATTGATTTTTGCAGGGAAACAATTAGAAGAT 32810 >seq5467 Length=66102 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| | |||||||| |||||||| ||||| |||||| | Sbjct 30047 ATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCTAGT 29988 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| ||||||| ||||||||||| | || || || Sbjct 29987 GATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAG 29928 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| || |||| ||| || |||||| | || ||| || | || ||||| Sbjct 29927 CAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGACTACAAT 29868 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||| || || ||| | || || | || ||||||| Sbjct 29867 ATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGG 29821 >seq1267 Length=316221 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||| || |||| || || ||||| ||| ||||| ||||| | Sbjct 205973 ATGCAAATCTTTGTTAAGACTCTGACAGGTAAAACCATCACCCTGGAAGTTGAACCAAGT 205914 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | ||||| |||||| || ||||| || | || || || Sbjct 205913 GACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAGGGGATCCCTCCAGACCAG 205854 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||| | |||| ||| ||||| ||| | || ||| | ||| || ||||| ||| Sbjct 205853 CAGAGGTTAATTTTTGCTGGCAAGCAACTGGAGGATGGAAGAACCTTGTCAGATTATAAC 205794 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| || || || || || || ||||||||||| || || || || Sbjct 205793 ATACAGAAGGAGTCGACCCTCCACTTAGTATTGAGATTGCGTGGTGG 205747 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| | || ||||| ||||||||| | ||| |||||| | Sbjct 206429 ATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGT 206370 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | ||||| || || ||||||||||| | || || || Sbjct 206369 GACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 206310 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||| | |||| ||| || || || || |||||| | |||| | |||||||| Sbjct 206309 CAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206250 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||| || ||||| || ||||| ||||| | ||||||| Sbjct 206249 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 206203 >seq629 Length=499154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || | ||||| || ||||| || ||||| || || | Sbjct 5738 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 5797 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || ||| ||| || ||||| |||||| | || ||| ||| Sbjct 5798 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 5857 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 || || || || | ||| || |||||| | || ||| || || ||| | | | |||| Sbjct 5858 CAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTG--ACTACA 5915 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||| |||||||||||||| |||||| | || |||| | | ||||| Sbjct 5916 ACATCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAGGGGAGG 5964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400923341498144