Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5467 125 7e-24 seq1267 120 3e-22 seq4435 111 2e-19 seq629 104 2e-17 >seq5467 Length=66102 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | ||||| || || || || || ||||||||||| || |||||||| | Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || || ||||| ||||||||||| | | ||||| || || || Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||||||| ||| || || | || || | ||| || Sbjct 29941 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACT 30000 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||||||||| || |||| ||||| || || || ||||| Sbjct 30001 TCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || ||||| || ||||| || || || || ||| | || || |||||||| ||| Sbjct 29623 GTAGATTCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCATCCTCCAGCTGTTTACCT 29682 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 |||||||||| | ||| || || || || ||||||||||| ||||| || ||| ||| Sbjct 29683 GCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTT 29742 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | |||||| | |||||| || | ||| || ||||| || || | || Sbjct 29743 ACATTCTCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGTC 29802 Query 134697 TTAACGAAAATTTGCAT 134713 || || ||||| ||||| Sbjct 29803 TTGACAAAAATCTGCAT 29819 >seq1267 Length=316221 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||||| |||||| || || || || ||||| ||||||||||| ||||| | | Sbjct 206431 CCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGAC 206490 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || || || | |||||| || |||||||| || | ||| || || || || Sbjct 206491 AA-TGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGG 206549 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||||||||| ||||| || | ||||| | ||||| Sbjct 206550 AATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCAC 206609 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| || |||| ||||| || || || ||||| Sbjct 206610 TTCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||||||||| | || ||| | ||| || || || || |||||||| ||||| || | Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||| || |||||||||||||| | |||||| || || || Sbjct 206263 AAAGTTCTTCCA-TCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGG 206321 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || || || || | |||||| | ||| || Sbjct 206322 GATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAAC 206381 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||||||||| ||||| | ||||| || || || ||||| Sbjct 206382 TTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||||||||| | || ||| | ||| || || || || |||||||| ||||| || | Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||| || |||||||||||||| | ||||| || || || Sbjct 206035 AAAGTTCTTCCA-TCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGG 206093 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCA 134664 || || ||||| || || ||||| || | || | |||| ||||| | ||| | Sbjct 206094 GATCCCCTCTTTATCCTGGATTTTAGCCTTTA-CGTTTTCAATAGTGTCACTTGGTTCAA 206152 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || |||||||| || | ||| ||||| || || ||||| Sbjct 206153 CTTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAG 134556 || ||| || | ||| || || || ||||| || ||||| || || | ||| | | | Sbjct 205758 TCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGACAAGGTTCTTCC 205817 Query 134557 AGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTT 134616 | || || || || ||||| |||||||| || | |||||| || || || || || |||| Sbjct 205818 A-TCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCCCTCTT 205876 Query 134617 TTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAA 134676 | || |||||||| || || || | ||||| | ||| || || || || | Sbjct 205877 TATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTGA 205936 Query 134677 TGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||||| || | ||| ||||| || |||||||| Sbjct 205937 TGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 >seq4435 Length=89394 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||| ||||| ||||| || || || | |||| || || || | ||| Sbjct 36248 GTGAAGTGTGGACTCCTTCTGAATATTATAATCTGATAAGGTGCGACCATCTTCCAACTG 36189 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| |||||||||||||| | || ||||| || || || |||||||| ||||||||||| Sbjct 36188 TTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTT 36129 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | || || | ||| || || |||||||| ||||| || || Sbjct 36128 GGCTTTTACATTTTCAATAGTATCACTGGGTTCAACTTCCAGAGTAATTGTTTTTCCAGT 36069 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||| || |||||||| Sbjct 36068 AAGTGTTTTAACAAAGATTTGCAT 36045 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||||||||| | || || | ||| || || || || || || ||||| || || | Sbjct 36501 TTCCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTG 36442 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || | | | | || || | |||||| |||||||| || || | ||| || || || Sbjct 36441 ACAGAGTTCTCCCA-TCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGT 36383 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| || || |||||| ||| || || | ||||| | ||| Sbjct 36382 GGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCA 36323 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || || || | |||||| ||||| || ||||| Sbjct 36322 ACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| |||||||||||||| | || ||||| || || || |||||||| || || ||| Sbjct 32800 TGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATT 32741 Query 134628 TTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 ||| ||| | || | |||| || || | ||| || ||||| || || || || || Sbjct 32740 TTTGCTTTCA-CGTTTTCAATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCC 32682 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||| ||||| || ||||| Sbjct 32681 TGTAAGAGTTTTGACGAAGATCTGCAT 32655 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | |||| || || | ||| || || ||||| || ||||||||||| || | | Sbjct 36727 CCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGAC 36668 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || | || || || |||||||| || | || || || || || Sbjct 36667 AGGGTTCTTCCA-TCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGG 36609 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || |||||||| || ||| || || | ||| || | ||| || Sbjct 36608 GATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTAC 36549 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || |||||||| || || | ||| ||||| |||||||||||| Sbjct 36548 CTCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 >seq629 Length=499154 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || | | || || ||||| || ||||| ||||| ||||||||||| | Sbjct 5964 CCTCCCCTCAGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAA 5905 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || || ||||| || ||||| |||| | ||| || || || || Sbjct 5904 AGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGG 5845 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || ||| ||| || || | |||||| | ||||| Sbjct 5844 ATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACT 5785 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| |||||||| || || | || || || ||||||||||| Sbjct 5784 TCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||| || || || || | || || ||||||||||||||||| || | || | Sbjct 6183 AGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGTACGT 6124 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || ||||| || ||||| |||| | ||| || || || || |||||||| Sbjct 6123 CCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCC 6064 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || ||| ||| || || | |||||| | ||||| || | ||| Sbjct 6063 TTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTG 6004 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | || || || ||||||||||| Sbjct 6003 ATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503586590958360