Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq5418 136 3e-27
seq3845 131 1e-25
seq6658 96.9 3e-15
>seq5418
Length=65370
Score = 136 bits (150), Expect = 3e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735
||||| |||||| || |||||||| ||||||| ||| |||| | ||||| |||
Sbjct 6702 TTGCTGCGAGAAAACCCTAGAAGGTTTGTAATGTTTCCCATTGAATACCCAGACATCTGG 6761
Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795
|| |||||||| | ||| |||| |||||||||||||||||||||||||| || | ||
Sbjct 6762 CAGATGTACAAGAGGGCAGAGGCTTCATTTTGGACAGCAGAAGAAGTTGACTTATCCAAG 6821
Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855
|| || | ||| |||||| |||||| ||| ||||| ||| || |||
Sbjct 6822 GATGTATATGACTGGGAACAGTTAAAAGATGAAGAAAGACACTTTATTTCTCATGTCTTG 6881
Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAA 43893
|| || |||||||| || || |||||||| ||||||||
Sbjct 6882 GCTTTCTTTGCTGCTAGTGATGGGATAGTTAATGAAAA 6919
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|| ||||| || || | ||||| | ||||||||||| || ||||||||||| ||||||
Sbjct 7415 CAGGAAGTGCAGGTAACCGAAGCTAGGTGTTTTTATGGTTTCCAAATTGCCATTGAAAAT 7474
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|||| || |||||||| ||| | | || || || |||||||| |||
Sbjct 7475 GTTCACTCAGAAATGTATAGTTTGTTAATTGACACCTACATCAAGGAT 7522
Score = 86.0 bits (94), Expect = 5e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||| ||||||| ||||||||||| || ||||| |||||||
Sbjct 9076 AAAATCCATTTGATTTTATGGAACATATTTCTTTGGAAGGCAAGACCAACTTCTTTGAAA 9135
Query 44553 AACGCGTTGGAGAATATCAG 44572
| || || |||||||||
Sbjct 9136 AGAAAGTGGGTGAATATCAG 9155
>seq3845
Length=110360
Score = 131 bits (144), Expect = 1e-25
Identities = 161/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743
||||||||| || ||||| | ||||| ||| |||| | ||||| ||||| |||||
Sbjct 70825 AGAAAATCCTCGGAGATTTGTTATTTTTCCCATTGAATACCCAGACATCTGGCAGATGTA 70884
Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGC 43803
|| |||||| |||| ||||| ||||| | ||||||||||||| || | |||||| |
Sbjct 70885 TAAGAAAGCAGAGGCTTCATTCTGGACTGTAGAAGAAGTTGATCTGTCCAAAGACCTGAT 70944
Query 43804 ACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTT 43863
||| ||| |||||| | | ||| |||| ||||| ||| | |||| || ||
Sbjct 70945 ACAGTGGGAGAATTTAAAAGAAGATGAACAACACTTTATTTCTCACATCCTGGCTTTCTT 71004
Query 43864 TGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903
|||||| || || ||||| || ||||||||| | || |||
Sbjct 71005 TGCTGCTAGTGATGGGATTGTTAATGAAAATCTTGTAAGT 71044
Score = 104 bits (114), Expect = 2e-17
Identities = 87/107 (81%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|| ||||||||| || ||||||| | ||||||||||| || ||||||||||| ||||||
Sbjct 72235 CAGGAAGTTCAAGTAACAGAAGCTAGGTGTTTTTATGGTTTCCAAATTGCCATTGAAAAT 72294
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019
| ||||| |||||||||||| | | || || || ||||||| |||
Sbjct 72295 GTCCATTCAGAAATGTACAGTTTGTTAATTGACACATACATCAGAGA 72341
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/107 (80%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541
||||| ||| |||| || ||||||||||||||| | || || ||||||||||| |||||
Sbjct 75459 CTATAATGTGGAAAATCCTTTTGATTTTATGGAACACATATCTTTGGAAGGCAAGACAAA 75518
Query 44542 CTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATG-GGCGTCATG 44587
|||||||||||| || || || |||||| |||| || ||||||
Sbjct 75519 CTTTTTTGAAAAGAAGGTGGGCGAGTATCAG-AAATGTGGGGTCATG 75564
>seq6658
Length=47451
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/221 (71%), Gaps = 9/221 (4%)
Strand=Plus/Minus
Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100
|| ||||| || ||||| |||| || | |||| | || || || |||||||| || ||
Sbjct 25053 TTCAATGCTATTGAAACCTTACCCTGTG-TTAAGAAGAAGGCTGATTGGGCCCTGAACTG 24995
Query 44101 GATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157
||| || |||| | | ||| || |||||||| || || || | ||| |||||
Sbjct 24994 GATTGATAACAATGCTGCCCCATTTCCTGAGCGACTTGTAGCCTTCGCTGCTGTAGAAGG 24935
Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217
|| |||||||| || || ||||| | || || ||||||||||| | || |||||||
Sbjct 24934 GATCTTCTTTTCGGGTTCCTTTGCCTCTATCTTCTGGTTAAAGAAGAGGGGAATGATGCC 24875
Query 44218 TGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGA 44256
||| ||||| ||||| || || | ||||| | |||||
Sbjct 24874 TGGCTTGAC--TTTCAGTAACGAACTGATAAGCAGAGATGA 24836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396066776141965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |