Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5418 136 3e-27 seq3845 131 1e-25 seq6658 96.9 3e-15 >seq5418 Length=65370 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 ||||| |||||| || |||||||| ||||||| ||| |||| | ||||| ||| Sbjct 6702 TTGCTGCGAGAAAACCCTAGAAGGTTTGTAATGTTTCCCATTGAATACCCAGACATCTGG 6761 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || |||||||| | ||| |||| |||||||||||||||||||||||||| || | || Sbjct 6762 CAGATGTACAAGAGGGCAGAGGCTTCATTTTGGACAGCAGAAGAAGTTGACTTATCCAAG 6821 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || || | ||| |||||| |||||| ||| ||||| ||| || ||| Sbjct 6822 GATGTATATGACTGGGAACAGTTAAAAGATGAAGAAAGACACTTTATTTCTCATGTCTTG 6881 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAA 43893 || || |||||||| || || |||||||| |||||||| Sbjct 6882 GCTTTCTTTGCTGCTAGTGATGGGATAGTTAATGAAAA 6919 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| || || | ||||| | ||||||||||| || ||||||||||| |||||| Sbjct 7415 CAGGAAGTGCAGGTAACCGAAGCTAGGTGTTTTTATGGTTTCCAAATTGCCATTGAAAAT 7474 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||| || |||||||| ||| | | || || || |||||||| ||| Sbjct 7475 GTTCACTCAGAAATGTATAGTTTGTTAATTGACACCTACATCAAGGAT 7522 Score = 86.0 bits (94), Expect = 5e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||| ||||||| ||||||||||| || ||||| ||||||| Sbjct 9076 AAAATCCATTTGATTTTATGGAACATATTTCTTTGGAAGGCAAGACCAACTTCTTTGAAA 9135 Query 44553 AACGCGTTGGAGAATATCAG 44572 | || || ||||||||| Sbjct 9136 AGAAAGTGGGTGAATATCAG 9155 >seq3845 Length=110360 Score = 131 bits (144), Expect = 1e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| || ||||| | ||||| ||| |||| | ||||| ||||| ||||| Sbjct 70825 AGAAAATCCTCGGAGATTTGTTATTTTTCCCATTGAATACCCAGACATCTGGCAGATGTA 70884 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGC 43803 || |||||| |||| ||||| ||||| | ||||||||||||| || | |||||| | Sbjct 70885 TAAGAAAGCAGAGGCTTCATTCTGGACTGTAGAAGAAGTTGATCTGTCCAAAGACCTGAT 70944 Query 43804 ACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTT 43863 ||| ||| |||||| | | ||| |||| ||||| ||| | |||| || || Sbjct 70945 ACAGTGGGAGAATTTAAAAGAAGATGAACAACACTTTATTTCTCACATCCTGGCTTTCTT 71004 Query 43864 TGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 |||||| || || ||||| || ||||||||| | || ||| Sbjct 71005 TGCTGCTAGTGATGGGATTGTTAATGAAAATCTTGTAAGT 71044 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||||||| || ||||||| | ||||||||||| || ||||||||||| |||||| Sbjct 72235 CAGGAAGTTCAAGTAACAGAAGCTAGGTGTTTTTATGGTTTCCAAATTGCCATTGAAAAT 72294 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 | ||||| |||||||||||| | | || || || ||||||| ||| Sbjct 72295 GTCCATTCAGAAATGTACAGTTTGTTAATTGACACATACATCAGAGA 72341 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 ||||| ||| |||| || ||||||||||||||| | || || ||||||||||| ||||| Sbjct 75459 CTATAATGTGGAAAATCCTTTTGATTTTATGGAACACATATCTTTGGAAGGCAAGACAAA 75518 Query 44542 CTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATG-GGCGTCATG 44587 |||||||||||| || || || |||||| |||| || |||||| Sbjct 75519 CTTTTTTGAAAAGAAGGTGGGCGAGTATCAG-AAATGTGGGGTCATG 75564 >seq6658 Length=47451 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/221 (71%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 || ||||| || ||||| |||| || | |||| | || || || |||||||| || || Sbjct 25053 TTCAATGCTATTGAAACCTTACCCTGTG-TTAAGAAGAAGGCTGATTGGGCCCTGAACTG 24995 Query 44101 GATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 ||| || |||| | | ||| || |||||||| || || || | ||| ||||| Sbjct 24994 GATTGATAACAATGCTGCCCCATTTCCTGAGCGACTTGTAGCCTTCGCTGCTGTAGAAGG 24935 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 || |||||||| || || ||||| | || || ||||||||||| | || ||||||| Sbjct 24934 GATCTTCTTTTCGGGTTCCTTTGCCTCTATCTTCTGGTTAAAGAAGAGGGGAATGATGCC 24875 Query 44218 TGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGA 44256 ||| ||||| ||||| || || | ||||| | ||||| Sbjct 24874 TGGCTTGAC--TTTCAGTAACGAACTGATAAGCAGAGATGA 24836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396066776141965