Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4435 111 1e-19 seq1267 102 7e-17 seq5467 98.7 8e-16 seq1632 91.5 1e-13 >seq4435 Length=89394 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || ||||||| | |||||| || | || || || || |||||||| || || Sbjct 36273 TGCCACCACGCAACCTAAGTACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTG 36214 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | ||||| | |||||| || || |||| | | |||||||| || | Sbjct 36213 ATAAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTG 36154 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || |||||||| || ||| ||| | |||| | ||| || ||| ||||| Sbjct 36153 GAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTTCAA 36094 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| || | ||| || || || ||||| |||||||||||||| Sbjct 36093 CTTCCAGAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 >seq1267 Length=316221 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 ||||||| | | || || || || || | || || ||||||||||||||||| || | Sbjct 206201 TGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAG 206260 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | | ||| | | ||||| | ||| || || || |||| | | ||| || || || Sbjct 206261 ATAAAGTTCTTC-CATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGA 206319 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || ||||| || |||||| |||| |||| | ||||| ||| |||| Sbjct 206320 GGGATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCA 206379 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| || || | |||||| || || |||||||||||||| ||||| Sbjct 206380 ACTTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 ||||||| | | || || || || || | || || ||||||||||||||||| || | Sbjct 205973 TGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAG 206032 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | | ||| | | ||||| | ||| || || || |||| | | || || || || Sbjct 206033 ATAAAGTTCTTC-CATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGA 206091 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||||||||| ||| || || | | |||| | |||||| | | |||| Sbjct 206092 GGGATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCA 206151 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || |||| ||| || |||||||| || |||||||| ||||| Sbjct 206152 ACTTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | | ||| || | ||| | ||||| ||||||||||| || ||||| Sbjct 206429 TGCCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTG 206488 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | || || | |||||| || || |||| | | |||||| || || | Sbjct 206489 ACAATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGG 206548 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || || ||| || | |||| | ||||| | | || | Sbjct 206549 GAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCA 206608 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| |||| ||| || || || ||||| |||||||| ||||| Sbjct 206609 CTTCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 >seq5467 Length=66102 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| |||| |||| ||| | || || || ||||| ||||||||||| Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || || || |||||||| || ||||||| | || || || || || Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || || || ||| | | || | ||| || | | ||| ||| Sbjct 29941 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACT 30000 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | |||||| || || |||||||||||||| ||||| Sbjct 30001 TCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 >seq1632 Length=265768 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 131614 GGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCAC 131673 ||||||||||| ||||||| || | | ||| ||||| |||||||| || || | Sbjct 30763 GGGACACATTAAAGACCACATTCCATCATTTTCTACTCGAGACATAAACAGGTCTGGTAT 30822 Query 131674 CCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAA 131733 ||| || || || |||| || | |||| | || || |||| || ||||||||| Sbjct 30823 CCACAAAGCATAAAACAAGTCACGAGCTCGATGTTCCTCCTTACCAGTATTTTTTTTCAG 30882 Query 131734 ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 || | ||| || ||||| || |||||||| ||||||||||| || || Sbjct 30883 ATCCAGAAATTCAAAAATATCTGCATGCCATGGTTCCAAATAGACAGC 30930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423449131173816