Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_028107.1 Length=34064 Score E Sequences producing significant alignments: (Bits) Value seq70663 176 1e-39 seq73759 86.0 1e-12 >seq70663 Length=227 Score = 176 bits (194), Expect = 1e-39 Identities = 155/189 (82%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 5720 TGGTCAGAAAAAACAATCTTTTTATTGTCAAGTTTCGTGGCAAACGACCCGTAGAGGGCG 5779 ||||||||||| |||||||||| ||||||| || |||||||||| ||||||||||||| Sbjct 45 TGGTCAGAAAAGACAATCTTTTG--TGTCAAGCTTGGTGGCAAACG-CCCGTAGAGGGCG 101 Query 5780 TTAGATAGCAATTTGGCAATGGAACGTAAAGTTTGAtttttttCGCGGTCGGCCCGCTCC 5839 || || ||||| ||||| ||||| || | ||||| ||||| |||| ||||| |||||| Sbjct 102 TTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGGTTTTTG-CGCGATCGGCGCGCTCC 160 Query 5840 TTGGCCGCGATGTTAAGTTGTACGTACTCCCGGGCCACGCAGCGCCACTCCGGGAAAACA 5899 |||||||||||||| || || ||||| || || || ||||| ||||| || || |||| Sbjct 161 TTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCATTC--GGGAAACG 218 Query 5900 GTAGTGCGC 5908 || |||||| Sbjct 219 GTGGTGCGC 227 >seq73759 Length=212 Score = 86.0 bits (94), Expect = 1e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 6162 CGGCCAGAGCCCTCTCGTACGGATTAAGGGGAGGACCCCAGGGCATGGGGTGAGTAAGGG 6221 |||| || || | |||||| || || || || |||||||| ||||||||||| || || | Sbjct 74 CGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGGTGGGTGAGCG 133 Query 6222 CAGAAGCGTACATGCCGCAAATGTC 6246 | || |||||||||||||||||||| Sbjct 134 CGGAGGCGTACATGCCGCAAATGTC 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108512380092516