Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq629 129 4e-25 seq1267 118 7e-22 seq1156 116 2e-21 seq5467 107 1e-18 seq4435 104 1e-17 >seq629 Length=499154 Score = 129 bits (142), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||||||||| |||||||| ||||| || | || || ||||||||||| ||||| Sbjct 6157 CTCCTTTTGAATGTTGTAATCTGAGAGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAA 6098 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||||||||| || || | || ||||||||| ||||||| ||||| Sbjct 6097 GATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATT 6038 Query 34635 TAAAATTGTGT--CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 ||||||| ||| | ||||||||||| || || ||||| || || | || ||| Sbjct 6037 CTCTATTGTGTCACTTGG--CTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTC 5980 Query 34693 ACAAAAATCTGCAT 34706 |||||||| ||||| Sbjct 5979 ACAAAAATTTGCAT 5966 Score = 122 bits (134), Expect = 5e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||| || || || ||||| ||||| || || ||||||||||| | || || Sbjct 5946 ACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTCC 5887 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||||||||| ||||| || | | ||||||||| || || | || ||||||||| | Sbjct 5886 AGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 5827 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGT--CTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||||| ||||| ||||||| ||| | ||||||||||| || || |||| Sbjct 5826 ATCTTTGCTTTTACATTCTCTATTGTGTCACTTGG--CTCCACTTCCAAAGTGATGGTTT 5769 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || | || ||||||||||| |||||| || Sbjct 5768 TTCCAGTGAGGGTCTTCACAAAAATTTGCATGGTG 5734 >seq1267 Length=316221 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 |||||| | ||| ||||| || |||||||||||||| ||||| | ||| || | || Sbjct 206445 CAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGACCATC 206504 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || | ||||| || ||||| ||||| | ||||||||| || || | ||| || ||||| Sbjct 206505 CTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTC 206564 Query 34614 TGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 | ||| ||| | || || | ||| ||||| ||||||||||| || || | Sbjct 206565 T-TGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTGATAG 206623 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || |||| |||||| ||||| |||||||| Sbjct 206624 TTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || | || ||| || || || || ||| |||||||| || ||||| || Sbjct 206202 GCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGA 206261 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | |||| | ||||| | || || || ||||| || || | ||| ||||| || || Sbjct 206262 TAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGG 206321 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| |||||| || | | ||||||||| | || || Sbjct 206322 GATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAAC 206381 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | ||| || ||||| ||||| | ||||||||||| ||||||||| Sbjct 206382 TTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCATG 206430 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 ||| || || ||||| || |||||| || |||||||||||||| | |||| | || Sbjct 205761 CAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGACAAGGTTCTTCCATC 205820 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || ||||| || || ||||| ||||| | ||| ||||| || || | ||||| || || Sbjct 205821 CTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCCCTCTTTATC 205880 Query 34614 TGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATC 34671 ||| ||| | || || | ||| ||||| | | | || ||||||| ||| || Sbjct 205881 -CTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGT-TCAACTTCCAGGGTGATG 205938 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||||| || | || || ||||| || |||||| Sbjct 205939 GTTTTACCTGTCAGAGTCTTAACAAAGATTTGCATG 205974 >seq1156 Length=327524 Score = 116 bits (128), Expect = 2e-21 Identities = 163/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| |||||| ||| || ||||| || |||||||| ||||||| Sbjct 17709 AGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTT 17650 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || ||||||||||| | |||||| || || || | ||| || Sbjct 17649 CCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCT 17590 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT---AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665 || ||| ||| ||||| || || | || | ||| || ||||| ||||| | | Sbjct 17589 TTATCTTGGAT-TTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCT--ACTTCTAAG 17533 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || || || || || || ||||| ||||| |||||||| |||| Sbjct 17532 GTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCATTTTGA 17487 >seq5467 Length=66102 Score = 107 bits (118), Expect = 1e-18 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | |||| |||| ||| ||||| |||||||| || || || || ||| Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || ||||||||||| ||||| || | | || ||||| || || Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||||| ||| || | ||| || || | | | || | Sbjct 29941 ATACCTTCTTTGTCT-TGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGT-TCTA 29998 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 |||||| || || ||||| || |||| ||||||||||| ||||||||| |||| Sbjct 29999 CTTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCATGGTGAT 30053 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || ||||| |||||||| ||||| || || | || || || |||||||| ||||| Sbjct 29629 TCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAA 29688 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | | ||||||||| || || | || || |||||| ||||||| ||||| Sbjct 29689 ATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTC 29748 Query 34636 AAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||||||||| | | | ||||| |||| || || ||||| || || | || || || Sbjct 29749 TCAATTGTGTCACTTGGT-TCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTGAC 29807 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 29808 AAAAATCTGCAT 29819 >seq4435 Length=89394 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || || || || || || ||| || || |||||||||||||| Sbjct 36499 CCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGAC 36440 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | | ||||| | ||||| || ||||| ||||| | ||||||||| || || Sbjct 36439 AGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGA 36380 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || || ||| ||||| ||| || | ||| ||||| | || || Sbjct 36379 ATTCCTTCTTTATCCTGGAT-TTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAAC 36321 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | |||||| || || || || | ||||| || || ||||||||| Sbjct 36320 TTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCATG 36272 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 |||| ||||| ||||||||||| | || ||| | ||||| | |||||| || ||||| | Sbjct 32844 CCTTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAA 32785 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-AT 34635 | || | ||||| || || || | ||| || || || ||| ||||| ||| ||| | Sbjct 32784 TCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGAT-TTTTGCTTTCACGTTT 32726 Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 ||| || || | || ||||| | |||||| || || || || | ||||| || Sbjct 32725 TCAATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACG 32666 Query 34696 AAAATCTGCATG 34707 || ||||||||| Sbjct 32665 AAGATCTGCATG 32654 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || ||| |||||| ||||| ||||||||||| | || || | ||||| Sbjct 36253 ACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTGATAAGGTGCGACCATCTTCC 36194 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||| || ||||| || || | ||||| || || || | ||| || || ||| || Sbjct 36193 AACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCT-TG 36135 Query 34618 ATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| | ||||| | ||| || || | || ||||||| || || ||||| Sbjct 36134 AATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTTCAACTTCCAGAGTAATTGTTTT 36075 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||||| ||||| || ||||| Sbjct 36074 TCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313629528874769