Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5467 145 7e-30 seq4435 140 3e-28 seq1267 131 1e-25 seq1156 127 2e-24 seq629 113 4e-20 seq994 84.2 2e-11 >seq5467 Length=66102 Score = 145 bits (160), Expect = 7e-30 Identities = 181/247 (73%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 26972 TTTTAATTTATA-CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTC 27030 ||||| ||| | | |||||||||| ||||| ||||| || || ||||| | ||||||| Sbjct 30064 TTTTAGATTAGATCACCATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTC 30005 Query 27031 TTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAG 27090 | ||||| ||||| || | ||||||| || ||| |||||||||||||||||||| Sbjct 30004 TGGAAGTAGAACCTAGTGATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAG 29945 Query 27091 GCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA 27150 | || ||||| || || || | | || | || || |||||| |||| || | || Sbjct 29944 GTATTCCACCAGACCAGCAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGA 29885 Query 27151 CCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210 || |||| || ||||| || |||||||| || || | ||| ||||| |||| ||| | | Sbjct 29884 CCCTTTCTGACTACAATATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAG 29825 Query 27211 GTGGCAT 27217 | || || Sbjct 29824 GAGGGAT 29818 Score = 118 bits (130), Expect = 9e-22 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || || |||| ||| | || |||||||| Sbjct 29819 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAGT 29760 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||| || ||||||||||||||||| ||||| || ||| Sbjct 29759 GACACAATTGAGAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCTGACCAA 29700 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| |||| || | |||| |||| ||||| || Sbjct 29699 CAGAGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTATAAT 29640 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAA 27223 ||||| || || || || || ||| | || | | |||| ||||| |||||| Sbjct 29639 ATTCAGAAAGAATCTACTTTGCATCTTGTCCTAAGACTGCGTGGTGG---AACAAA 29587 >seq4435 Length=89394 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||||||||| || || || |||||| | || ||| | || || || || | Sbjct 35817 ATGCAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGGTAGAGCCTAGC 35876 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| ||||| || || || || ||||| |||||| Sbjct 35877 GACACCATAGAGAACGTCAAAGCTAAAATCCAAGATAAGGAGGGAATTCCACCTGATCAA 35936 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || || || |||||||| | ||| | || |||||||| Sbjct 35937 CAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAGATTACAAT 35996 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || |||||| ||||| || | | || ||||| || Sbjct 35997 ATTCAGAAGGAGTCTACTTTACATCTGGTTCTGAGACTTCGTGGTGGGAT 36046 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || || | |||||||| ||||| ||||| Sbjct 36045 ATGCAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACTCTGGAAGTTGAACCCAGT 36104 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 36105 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 36164 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || ||||| |||||||| || ||| | || ||||| || Sbjct 36165 CAAAGATTGATTTTTGCAGGGAAACAGTTGGAAGATGGTCGCACCTTATCAGATTATAAT 36224 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || ||||| | | ||||| |||||||| Sbjct 36225 ATTCAGAAGGAGTCCACACTTCACTTGGTACTTAGGTTGCGTGGTGGCAT 36274 Score = 102 bits (112), Expect = 7e-17 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || |||||||| || || | || || ||||| || ||||| Sbjct 36501 ATGCAAATTTTTGTTAAGACTCTGACAGGAAAAACCATCACCCTTGAGGTAGAACCCAGT 36560 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || |||||||| || || || || || || || ||| Sbjct 36561 GATACAATCGAAAATGTGAAAGCTAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCAA 36620 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || || ||||||||||| | ||| | || ||||||||| Sbjct 36621 CAAAGGTTAATTTTTGCTGGGAAGCAATTGGAAGATGGAAGAACCCTGTCAGATTACAAC 36680 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC--ATAAC 27220 ||||| || || || ||| | || ||||| || | |||| || ||| ||||| Sbjct 36681 ATTCAGAAAGAATCAACCCTTCACTTGGTACTGAGACTGCGTGGAGGCCAATAAC 36735 >seq1267 Length=316221 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || || || |||| ||||| |||||||| || Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||||||||||||||| || || || || ||| Sbjct 206597 GACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAA 206538 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||| | || || ||||| ||||| || || || | || || || ||| Sbjct 206537 CAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTATAAC 206478 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||| | || ||| | | || || ||||| Sbjct 206477 ATTCAAAAAGAATCTACTCTTCATCTAGTGTTGAGACTCCGTGGGGGCAT 206428 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || |||||||| || || | || || || ||||| ||||| Sbjct 205974 CATGCAAATCTTTGTTAAGACTCTGACAGGTAAAACCATCACCCTGGAAGTTGAACCAAG 205915 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || |||||||| || ||||| || || || || || || Sbjct 205914 TGACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAGGGGATCCCTCCAGACCA 205855 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | ||||| | || ||||| ||| |||| || | ||| | || ||||| || Sbjct 205854 GCAGAGGTTAATTTTTGCTGGCAAGCAACTGGAGGATGGAAGAACCTTGTCAGATTATAA 205795 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||||||| | || || || ||| | ||||| ||||| Sbjct 205794 CATACAGAAGGAGTCGACCCTCCACTTAGTATTGAGATTGCGTGGTGG 205747 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || |||||||| | ||||| || ||||| ||||| Sbjct 206430 CATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAG 206371 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || || |||||||||||||| || || || || || Sbjct 206370 TGACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 206311 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || || || |||||||| | || | || |||||||| Sbjct 206310 GCAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAA 206251 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||||| ||||| || Sbjct 206250 TATTCAAAAAGAGTCAAC 206233 >seq1156 Length=327524 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| |||| || ||| ||||||| | ||||| || || Sbjct 17492 ATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAGCCTAGT 17551 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || |||||| ||||| |||||||| || || || |||||| Sbjct 17552 GACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAA 17611 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||||| || || || || | ||||| | || | || |||||||| Sbjct 17612 CAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAGATTACAAT 17671 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || | ||| | ||| | ||| | || ||||| || Sbjct 17672 ATTCAGAAAGAGTCCACTCTTCATCTTGTTCTACGTCTACGTGGTGGTAT 17721 >seq629 Length=499154 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || || | || ||| | |||||||| || Sbjct 5966 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 6025 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||| || |||||||| |||||||| ||||| || ||| Sbjct 6026 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 6085 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || |||||| | || || | || | || ||||||||| Sbjct 6086 CAGAGACTGATCTTTGCTGGTAAACAACTAGAGGATGGACGTACACTCTCAGATTACAAC 6145 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || || ||| | || || | |||| ||||| Sbjct 6146 ATTCAAAAGGAGTCTACTTTGCATCTTGTCTTAAGACTGCGTGGTGG 6192 >seq994 Length=361151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 49825 CCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGCC 49884 || || ||| |||||||| | |||||||||||||| ||| | ||||| || ||||| Sbjct 158595 CCAGGAAAACGACATTGGCTAAAAATTAAAAAAGATTACCTAGAAGATGGAGCAATGGCA 158536 Query 49885 GATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGTGGCTTC 49944 ||| | |||| | || ||| | || |||| | || ||||||| || ||||| | Sbjct 158535 GATTCAGCTGATCTTGTTGTTCTTGGAGCATATTTTGGAACTGGAAATAAAGGTGGAATG 158476 Query 49945 TTGTCTACATTTTTGATGGGATGT 49968 |||| | |||| ||||||||||| Sbjct 158475 ATGTCAATATTTCTGATGGGATGT 158452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433401423016649