Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5467 185 2e-41 seq4435 168 2e-36 seq629 150 4e-31 seq1156 145 2e-29 seq1267 141 2e-28 seq2201 95.1 3e-14 >seq5467 Length=66102 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||||||||||||| || | ||| || ||||| || || |||||||| | |||||| Sbjct 29598 ACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAGAAAGGGT 29657 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || |||||| |||||||| || ||||| || || || | ||||||||||| |||| || Sbjct 29658 CCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCC 29717 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||||||| ||| || || || || |||||| ||| ||||| | Sbjct 29718 TTCTTTGTCTTGGATCTTTGCTTTTACATTCTCAATTGTGTCACTTGGTTCCACCTCCAA 29777 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || ||||| ||||| ||||| ||||| | |||||| Sbjct 29778 AGTGATAGTTTTTCCAGTGAGGGTCTTGACAAAAATCTGCAT 29819 >seq4435 Length=89394 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || ||||| | |||||| || |||||||| |||||||||||||| | || || || Sbjct 36490 AGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGACAGAGTTCTC 36431 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| | ||| || ||||| ||||| | | |||||||| || |||| |||||| Sbjct 36430 CCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCT 36371 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || |||||||| ||| |||||| ||||| || |||||| | |||||| ||||| || Sbjct 36370 TTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGTT 36311 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || ||||| || || || | |||||| Sbjct 36310 ATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 165 bits (182), Expect = 2e-35 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| ||||| || || | |||||| || || ||||| || ||||| ||||| | || Sbjct 36725 TCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAG 36666 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| ||||||||||||| ||||| || || || || | | ||||||||| ||||| | Sbjct 36665 GGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGAT 36606 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||| || || ||||| |||||| |||||||| || ||| | ||| ||||| Sbjct 36605 TCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACCTC 36546 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| || |||||||| ||||| | |||||| Sbjct 36545 AAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 Score = 158 bits (174), Expect = 3e-33 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| || || || || | ||| ||||| || || || || ||||| | | ||| Sbjct 36038 ACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGT 35979 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| |||||| || || ||||| | | |||||| ||||| |||| ||| Sbjct 35978 ACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCC 35919 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 ||||| || ||||| || ||| ||||| || |||||||| ||| || ||||| Sbjct 35918 CTCCTTATCTTGGATTTTAGCTTTGACGTTCTCTATGGTGTC---GCTAGGCTCTACCTC 35862 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 | |||||| ||||| || || || ||||||||||| | |||||||||| Sbjct 35861 CAAAGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCATTTTA 35813 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || || |||||||| | | ||| | |||||||| | || || ||||| || || Sbjct 32842 TTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATC 32783 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | | |||||| || || |||| |||||| || |||||||| ||| |||||||||||| Sbjct 32782 AATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCA 32723 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || || ||| | |||||| ||||| || || ||||| || || ||||| || || || Sbjct 32722 ATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAG 32663 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 32662 ATCTGCAT 32655 >seq629 Length=499154 Score = 150 bits (166), Expect = 4e-31 Identities = 169/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||||| |||||| || | ||| ||||| ||||| ||||| ||||| | || || Sbjct 6187 ACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGT 6128 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || || || || || || ||||| || | ||||||||||| || | || Sbjct 6127 ACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCC 6068 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 ||||||||| ||||||||| ||| || || || || |||||| ||| || || || Sbjct 6067 TTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCA---CTTGGCTCCACTTC 6011 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | |||||| || ||||| ||||| ||||| ||||| | ||||| Sbjct 6010 CAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || || || || || |||||||||||||| || || | ||| || | ||||| ||| Sbjct 5946 ACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTCC 5887 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 || || || || || ||||| || | ||||||||||| || | ||||||||||| ||| Sbjct 5886 AGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 5827 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTC 211082 |||||| ||| || || || || |||||| ||| || || || | |||||| || Sbjct 5826 ATCTTTGCTTTTACATTCTCTATTGTGTCA---CTTGGCTCCACTTCCAAAGTGATGGTT 5770 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| ||||| | ||||| Sbjct 5769 TTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 >seq1156 Length=327524 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| ||||| ||||||||||||||||| || || || ||||| | || || Sbjct 17713 ACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGT 17654 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||||| |||||||| ||||| || || | | ||||| ||||| |||| ||| Sbjct 17653 TCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCC 17594 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || ||||| ||| || || || || || |||||| || || || | Sbjct 17593 TTCTTTATCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAA 17534 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || |||||||| || | || |||||||| | ||||||||| Sbjct 17533 GGTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCATTTT 17489 >seq1267 Length=316221 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || || | |||||| || ||||||||||| || || ||||| | | || ||| Sbjct 205984 AGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTT 206043 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| |||||| ||||| || || | | ||| ||||| ||||| | || || Sbjct 206044 CCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGGATCCCCTCT 206103 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || |||||||| || || |||||||| || |||||| |||||| || || ||| Sbjct 206104 TTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTG 206163 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| ||||| | |||||| Sbjct 206164 ATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || || | |||||| || ||||||||||| || || ||||| | | || ||| Sbjct 206212 AGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTT 206271 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| |||||| ||||| || || | | || ||||| ||||| | |||||| Sbjct 206272 CCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCT 206331 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| ||||| ||||| || |||||| | |||||| || || || Sbjct 206332 TTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTA 206391 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || ||||| | |||||| Sbjct 206392 ATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| | ||| | || | ||| || || ||||| || || ||||||||||| | | ||| Sbjct 205752 ACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGACAAGGT 205811 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||| ||||| |||||||| || || || | | || ||||| ||||| | || Sbjct 205812 TCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCC 205871 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || || ||||| || || ||||| ||||| || |||||| |||||| || || Sbjct 205872 CTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAACTTCCAG 205931 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || |||||||| ||||| | ||||| Sbjct 205932 GGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 >seq2201 Length=213340 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | ||||||||| || || || |||||||| ||||| | || || | || Sbjct 161602 TCTTAGAACTAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGACAGAGTTCGGCC 161543 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||||||||||||||| || || ||||| || | || ||||||||||||| Sbjct 161542 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAA 161493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1154892655043445