Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5467 98.7 8e-16 seq1267 86.0 5e-12 >seq5467 Length=66102 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || ||||||||||| | ||| || ||| | || || |||||||| || ||||| Sbjct 29629 TCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAA 29688 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || | ||| ||||| | || | || |||||||| ||| || ||| | || Sbjct 29689 ATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTC 29748 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || || | ||||| |||| |||||| ||||||| || || || || ||| Sbjct 29749 TCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTGACA 29808 Query 39274 AAGATTTGCATC 39285 || || |||||| Sbjct 29809 AAAATCTGCATC 29820 >seq1267 Length=316221 Score = 86.0 bits (94), Expect = 5e-12 Identities = 167/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| || |||| || ||||||||| | | | ||| || || || || |||||| Sbjct 205958 TAACAAAGATTTG--CATGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTT 206015 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||| ||||| | | |||| | | || || | ||| || || ||||| || | Sbjct 206016 TTGAATATTGTAATCAGATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAA 206075 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | |||||||| | || | | |||||| ||| |||||| || | | | | Sbjct 206076 CCTTTGCTGGTCTGGAGGGATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAAT 206135 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 || || || | || || |||| |||||| |||| || ||||| || ||||||||||| Sbjct 206136 AGTGTCACTTGGTTCAACTTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGAT 206195 Query 39279 TTGCAT 39284 ||||| Sbjct 206196 CTGCAT 206201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428044213694009