Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq4435 143 2e-29
seq629 129 4e-25
seq1267 125 5e-24
seq5467 116 2e-21
seq1156 114 9e-21
>seq4435
Length=89394
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || |||||||| || || |||||||| || ||||| |||||||| |||
Sbjct 36045 ATGCAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACTCTGGAAGTTGAACCCAGT 36104
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||||| ||||| |||||| || |||||||| | || |||||||||
Sbjct 36105 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 36164
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | || || ||||| || ||||| ||||||| | ||||| ||| ||||| ||
Sbjct 36165 CAAAGATTGATTTTTGCAGGGAAACAGTTGGAAGATGGTCGCACCTTATCAGATTATAAT 36224
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || ||||||||| | || || || | |||||||| || ||
Sbjct 36225 ATTCAGAAGGAGTCCACACTTCACTTGGTACTTAGGTTGCGTGGTGG 36271
Score = 132 bits (146), Expect = 3e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| ||||| || || || || || || || ||||||||||| |||
Sbjct 36273 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 36332
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| |||||| | ||| |||||| || |||||||| | || ||||| |||
Sbjct 36333 GACACTATTGAAAATGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGACCAA 36392
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | ||||| ||||| || ||||| | ||||| | | ||| | ||||| |||
Sbjct 36393 CAGAGGTTAATCTTTGCAGGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAAC 36452
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
|| || |||||||| ||| | || ||||| | ||| | ||||||||
Sbjct 36453 ATCCAGAAAGAGTCTACACTTCACTTAGTCCTGAGGCTCAGAGGAGGA 36500
Score = 109 bits (120), Expect = 4e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| ||||| || || || || || || || ||||||||||| |||
Sbjct 32655 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 32714
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||||| | ||| |||||| || |||||||| | || |||||||||
Sbjct 32715 GATACTATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAA 32774
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | || || ||||| || |||||| | ||||| | ||||| ||| ||||| ||
Sbjct 32775 CAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGGCGCACCTTATCAGATTATAAT 32834
Query 23791 ATACAAAA 23798
|| || ||
Sbjct 32835 ATTCAGAA 32842
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||| ||||| || || || |||||||| ||||| || || || || |||
Sbjct 36500 AATGCAAATTTTTGTTAAGACTCTGACAGGAAAAACCATCACCCTTGAGGTAGAACCCAG 36559
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | |||| | ||| || ||| || || || || | || ||||| ||
Sbjct 36560 TGATACAATCGAAAATGTGAAAGCTAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCA 36619
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | ||||| ||||| || || ||| ||||||| | | | || | ||||||||
Sbjct 36620 ACAAAGGTTAATTTTTGCTGGGAAGCAATTGGAAGATGGAAGAACCCTGTCAGATTACAA 36679
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| || ||||| || || | || || || | || |||| |||||
Sbjct 36680 CATTCAGAAAGAATCAACCCTTCACTTGGTACTGAGACTGCGTGGAGG 36727
Score = 86.0 bits (94), Expect = 4e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665
||||||||||||| || || || || || || || || || |||||| | || || ||
Sbjct 35812 TTAAAATGCAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGGTAGAGC 35871
Query 23666 CCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725
| | ||||| | || | | ||| ||||| || || || || | || || |
Sbjct 35872 CTAGCGACACCATAGAGAACGTCAAAGCTAAAATCCAAGATAAGGAGGGAATTCCACCTG 35931
Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785
||||||| | ||||| ||||| || || || ||||||| | ||| || || ||||
Sbjct 35932 ATCAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAGATT 35991
Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|||| || || || ||||| || |||||| | |||
Sbjct 35992 ACAATATTCAGAAGGAGTCTACTTTACATCTGGTT 36026
>seq629
Length=499154
Score = 129 bits (142), Expect = 4e-25
Identities = 178/248 (72%), Gaps = 2/248 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || |||||||| |||||||| |||||| | ||||| || | |
Sbjct 5966 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 6025
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | ||||| ||| || ||||| ||||| | || || || |||
Sbjct 6026 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 6085
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||| || |||||||| || || | ||| || | |||||||||
Sbjct 6086 CAGAGACTGATCTTTGCTGGTAAACAACTAGAGGATGGACGTACACTCTCAGATTACAAC 6145
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGTTAAA 23850
|| ||||| ||||| || || ||| | || ||||| |||| || |||||| | ||||
Sbjct 6146 ATTCAAAAGGAGTCTACTTTGCATCTTGTCTTAAGACTGCGTGGTGGATCA--AATTAAG 6203
Query 23851 GATGAATT 23858
||| ||||
Sbjct 6204 GATAAATT 6211
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || |||||||| |||||||| |||||| | ||||| || | |
Sbjct 5738 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 5797
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | ||||| ||| || ||||| ||||| | || || || |||
Sbjct 5798 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 5857
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788
||| | | || ||||| || ||||||||||| || | || |||||| || ||||
Sbjct 5858 CAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTT--CTGACTACA 5915
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|||| |||||||| || || ||||| | ||| ||| || | |||||
Sbjct 5916 ACATCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAGGGGAGG 5964
>seq1267
Length=316221
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || || ||||| || || || |||||||| |||
Sbjct 206429 ATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGT 206370
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | || || || ||||||||||| | || ||||| ||
Sbjct 206369 GACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 206310
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || ||||| || || || ||||||| | | | |||||| ||||||||
Sbjct 206309 CAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206250
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||||||||| ||| | || ||||| | ||| | |||||||
Sbjct 206249 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 206203
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || ||||| || || || || ||||| ||||| || |||||||| | |
Sbjct 206201 ATGCAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAGT 206142
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| |||||| |||| ||||| || ||||| || | || ||||| ||
Sbjct 206141 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCAG 206082
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | || || ||||| || || || ||||||| | | | |||||| ||||||||
Sbjct 206081 CAAAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206022
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||||||||| ||| | || ||||| | ||| | |||||||
Sbjct 206021 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 205975
Score = 122 bits (134), Expect = 6e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||| || || |||||||| |||||||| ||||| || | |
Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | || |||||| ||||||||||| | || ||||| |||
Sbjct 206597 GACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAA 206538
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | ||||| ||||| || ||||| |||| || | ||||| || || || |||
Sbjct 206537 CAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTATAAC 206478
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|| |||||||| || || | ||| |||| || ||
Sbjct 206477 ATTCAAAAAGAATCTACTCTTCATCTAGTGTTGAG 206443
>seq5467
Length=66102
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || || ||||| || ||||| ||||| || | |
Sbjct 30047 ATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCTAGT 29988
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||| | ||||| ||||||| |||||||||||| | || ||||| ||
Sbjct 29987 GATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAG 29928
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || ||||| || ||||||||||| || | ||| || | || |||||
Sbjct 29927 CAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGACTACAAT 29868
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||| || || || | ||| | ||| | | ||| |||||||
Sbjct 29867 ATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGG 29821
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || |||||||| |||||||| |||||| | || || || | |
Sbjct 29819 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAGT 29760
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | ||||| ||| || ||||||||||| | || || || |||
Sbjct 29759 GACACAATTGAGAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCTGACCAA 29700
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||| || ||||| ||||| || | ||| || | ||||| ||
Sbjct 29699 CAGAGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTATAAT 29640
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCA 23841
|| || ||||| || || || ||| | || |||| |||| || ||| ||
Sbjct 29639 ATTCAGAAAGAATCTACTTTGCATCTTGTCCTAAGACTGCGTGGTGGAACA 29589
>seq1156
Length=327524
Score = 114 bits (126), Expect = 9e-21
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || |||||| | || ||||| || || || | ||||| || |
Sbjct 17489 AAAATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAGCCT 17548
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| |||||| |||| | |||| |||||| || |||||||| | || || |||
Sbjct 17549 AGTGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 17608
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|||||| | ||||||||||| || || || || ||||| | | | || || ||||||
Sbjct 17609 CAACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAGATTAC 17668
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
|| || || ||||||||||| | ||| | ||| ||
Sbjct 17669 AATATTCAGAAAGAGTCCACTCTTCATCTTGTTCTA 17704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 336828158530844
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