Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq4435 140 8e-28
seq1156 140 8e-28
seq1267 127 5e-24
seq5467 118 3e-21
seq629 116 9e-21
seq19878 109 1e-18
seq10459 91.5 4e-13
>seq4435
Length=89394
Score = 140 bits (154), Expect = 8e-28
Identities = 164/219 (75%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
|| |||||||| | ||| || || || ||||| |||| || ||||| | || |||||||
Sbjct 36490 AGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGACAGAGTTCTC 36431
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||||| ||| || || || ||||| | | |||||||| || ||||| |||||
Sbjct 36430 CCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCT 36371
Query 225616 TTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
|| || ||||| |||||| |||||| ||| || ||||| || ||| || || | ||
Sbjct 36370 TTATCCTGGAT-TTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGT 36312
Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| |||||||| || | |||||| | ||| | |||||
Sbjct 36311 TATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273
Score = 132 bits (146), Expect = 1e-25
Identities = 167/227 (74%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||||||||| || || || | ||| || || || || | ||||||||| | ||| ||
Sbjct 36038 ACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGT 35979
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | |||||| ||||| ||||| | || |||||| || || ||||| ||
Sbjct 35978 ACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCC 35919
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
||||| |||||||| ||| || || || || |||||||| | || || || |
Sbjct 35918 CTCCTTATCTTGGAT-TTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACCTCCA 35860
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717
| ||||| |||||||| || | || |||| || | |||||||||
Sbjct 35859 AAGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCATTTTA 35813
Score = 132 bits (146), Expect = 1e-25
Identities = 163/223 (73%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| |||||||| || | ||| || || |||||||| || | |||||||| | || ||
Sbjct 36722 ACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGT 36663
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
||| |||||||| | ||||||||||| || || | | ||||||||| || || || ||
Sbjct 36662 TCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCC 36603
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| ||||| ||||| |||||| |||||| || || || ||| || || |
Sbjct 36602 CTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACCTCAAG 36543
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || || || |||| ||| || | || | |||||||
Sbjct 36542 GGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500
Score = 95.1 bits (104), Expect = 3e-14
Identities = 136/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| || | ||| ||||| | || || | ||||||||||| || ||||| || || ||
Sbjct 32842 TTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATC 32783
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTC 225644
| || |||||| || || ||||| ||||| || || ||||| |||||| ||||| |||
Sbjct 32782 AATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGAT-TTTTGCTTTCACGTTTTC 32724
Query 225645 GATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|| || || || ||| || || | || || |||||||| || | |||||| | |||
Sbjct 32723 AATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAA 32664
Query 225705 CACTTGCAT 225713
| |||||
Sbjct 32663 GATCTGCAT 32655
>seq1156
Length=327524
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||| || |||||||| ||||| || | ||||||||| | | ||||| ||||||
Sbjct 17703 AGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATCT 17644
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
||||||||||| || || || || | || ||||| || || ||||| ||||| || |||
Sbjct 17643 TCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATCT 17584
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||| ||| ||| ||| || || ||||| | || || ||||| || || |||
Sbjct 17583 TGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGTC 17524
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| || ||||| ||||||| || | ||||||||
Sbjct 17523 TTTCCTGTCAAGGTTTTTACAAAGATCTGCATTTT 17489
>seq1267
Length=316221
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
|| ||||| || | ||| || || || |||||||| | ||||||||| | ||||||||
Sbjct 206212 AGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTT 206271
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||| | |||||| || || || || | | || ||||| || || || |||||
Sbjct 206272 CCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCT 206331
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
|||||||||||||| ||||||| ||| || ||||| || ||| || |||| ||
Sbjct 206332 TTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTA 206391
Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698
|| || ||||| || | |||||
Sbjct 206392 ATGGTTTTGCCGGTAAGGGTTTT 206414
Score = 113 bits (124), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| ||||||| || || || ||||| ||||||||||| | || || || | ||| ||
Sbjct 206436 ACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGT 206495
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || | ||| || ||||| || || | || |||||||| || ||||| ||
Sbjct 206496 GCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCC 206555
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| |||||||| || || ||| ||| ||| |||||||| | ||||| || |
Sbjct 206556 TTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAG 206615
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || | ||||||| || | |||||
Sbjct 206616 AGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657
>seq5467
Length=66102
Score = 118 bits (130), Expect = 3e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| ||||| |||||||| || | ||| |||||||| || | ||| ||||| | | ||
Sbjct 29598 ACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAGAAAGGGT 29657
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || ||||| || || || || || |||| |||||||| || ||||| ||
Sbjct 29658 CCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCC 29717
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| ||||||||||||||| || ||| || || ||||| | |||||| || ||
Sbjct 29718 TTCTTTGTCTTGGATCTTTGCTTTTACATTCTCAATTGTGTCACTTGGTTCCACCTCCAA 29777
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| || || || ||
Sbjct 29778 AGTGATAGTTTTTCCAGT 29795
Score = 96.9 bits (106), Expect = 8e-15
Identities = 105/138 (76%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
|| ||| || || || ||||| ||||| ||||||| |||||| || | | || | ||
Sbjct 29832 TCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAAAGGGTCCGTCC 29891
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||| || || || || || || || || |||| ||| ||||| || ||||||||||| ||
Sbjct 29892 ATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGAATACCTTCTTT 29951
Query 225618 GTCTTGGATCTTTTGCTT 225635
|||||| || ||||||||
Sbjct 29952 GTCTTGAAT-TTTTGCTT 29968
>seq629
Length=499154
Score = 116 bits (128), Expect = 9e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| ||||| | |||||| || | ||| || || ||||| | |||||||| | | ||
Sbjct 6187 ACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGT 6128
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| ||||| || || ||||| ||||| |||| |||||||| || || || ||
Sbjct 6127 ACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCC 6068
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||||||| || ||| || || ||||| | ||||| || ||
Sbjct 6067 TTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAA 6008
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || | || || | || | ||||||
Sbjct 6007 AGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
|| ||| | || || || || || ||||||||||||| ||||| || | | ||||
Sbjct 5955 AGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGA 5896
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
||||| || || || || ||||| ||||| |||| |||||||| || || || ||||||
Sbjct 5895 CCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCC 5836
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
||||||||||||||| || ||| || || ||||| | ||||| || || |||
Sbjct 5835 TTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTG 5776
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || || || | || || | || | ||||||
Sbjct 5775 ATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738
>seq19878
Length=1465
Score = 109 bits (120), Expect = 1e-18
Identities = 101/127 (80%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | |
Sbjct 521 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 580
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854
|||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | ||
Sbjct 581 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 640
Query 7855 GTTAGCT 7861
|||||||
Sbjct 641 GTTAGCT 647
>seq10459
Length=17825
Score = 91.5 bits (100), Expect = 4e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||| ||||||||||| ||||| ||||| || ||||| || ||||| || || ||
Sbjct 17162 GAAAATTTGTCCATCAGTAATGGAGATTACATTGGTTGGGATGTATGCAGACACGTCCCC 17103
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577
||||| || |||| ||| || | |||||||| || || || |||||
Sbjct 17102 AGCTTGGGTCTCGATAACGGGAAGAGCTGTTAGGGACCCTCCTCCAAA 17055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1188149201994342
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |