Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4435 140 8e-28 seq1156 140 8e-28 seq1267 127 5e-24 seq5467 118 3e-21 seq629 116 9e-21 seq19878 109 1e-18 seq10459 91.5 4e-13 >seq4435 Length=89394 Score = 140 bits (154), Expect = 8e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || |||||||| | ||| || || || ||||| |||| || ||||| | || ||||||| Sbjct 36490 AGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGACAGAGTTCTC 36431 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||||| ||| || || || ||||| | | |||||||| || ||||| ||||| Sbjct 36430 CCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCT 36371 Query 225616 TTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || || ||||| |||||| |||||| ||| || ||||| || ||| || || | || Sbjct 36370 TTATCCTGGAT-TTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGT 36312 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || | |||||| | ||| | ||||| Sbjct 36311 TATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 132 bits (146), Expect = 1e-25 Identities = 167/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| || || || | ||| || || || || | ||||||||| | ||| || Sbjct 36038 ACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGT 35979 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| ||||| ||||| | || |||||| || || ||||| || Sbjct 35978 ACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCC 35919 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||| |||||||| ||| || || || || |||||||| | || || || | Sbjct 35918 CTCCTTATCTTGGAT-TTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACCTCCA 35860 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 | ||||| |||||||| || | || |||| || | ||||||||| Sbjct 35859 AAGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCATTTTA 35813 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||||||| || | ||| || || |||||||| || | |||||||| | || || Sbjct 36722 ACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGT 36663 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| | ||||||||||| || || | | ||||||||| || || || || Sbjct 36662 TCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCC 36603 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| ||||| |||||| |||||| || || || ||| || || | Sbjct 36602 CTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACCTCAAG 36543 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || |||| ||| || | || | ||||||| Sbjct 36542 GGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || || | ||| ||||| | || || | ||||||||||| || ||||| || || || Sbjct 32842 TTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATC 32783 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTC 225644 | || |||||| || || ||||| ||||| || || ||||| |||||| ||||| ||| Sbjct 32782 AATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGAT-TTTTGCTTTCACGTTTTC 32724 Query 225645 GATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || || || || ||| || || | || || |||||||| || | |||||| | ||| Sbjct 32723 AATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAA 32664 Query 225705 CACTTGCAT 225713 | ||||| Sbjct 32663 GATCTGCAT 32655 >seq1156 Length=327524 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || |||||||| ||||| || | ||||||||| | | ||||| |||||| Sbjct 17703 AGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATCT 17644 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| || || || || | || ||||| || || ||||| ||||| || ||| Sbjct 17643 TCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATCT 17584 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| ||| ||| ||| || || ||||| | || || ||||| || || ||| Sbjct 17583 TGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGTC 17524 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| ||||||| || | |||||||| Sbjct 17523 TTTCCTGTCAAGGTTTTTACAAAGATCTGCATTTT 17489 >seq1267 Length=316221 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || ||||| || | ||| || || || |||||||| | ||||||||| | |||||||| Sbjct 206212 AGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTT 206271 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| | |||||| || || || || | | || ||||| || || || ||||| Sbjct 206272 CCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCT 206331 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||||||| ||| || ||||| || ||| || |||| || Sbjct 206332 TTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTA 206391 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| || | ||||| Sbjct 206392 ATGGTTTTGCCGGTAAGGGTTTT 206414 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| || || || ||||| ||||||||||| | || || || | ||| || Sbjct 206436 ACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGT 206495 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | ||| || ||||| || || | || |||||||| || ||||| || Sbjct 206496 GCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCC 206555 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || || ||| ||| ||| |||||||| | ||||| || | Sbjct 206556 TTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAG 206615 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | ||||||| || | ||||| Sbjct 206616 AGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 >seq5467 Length=66102 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||| |||||||| || | ||| |||||||| || | ||| ||||| | | || Sbjct 29598 ACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAGAAAGGGT 29657 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || ||||| || || || || || |||| |||||||| || ||||| || Sbjct 29658 CCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCC 29717 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||||||| || ||| || || ||||| | |||||| || || Sbjct 29718 TTCTTTGTCTTGGATCTTTGCTTTTACATTCTCAATTGTGTCACTTGGTTCCACCTCCAA 29777 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| || || || || Sbjct 29778 AGTGATAGTTTTTCCAGT 29795 Score = 96.9 bits (106), Expect = 8e-15 Identities = 105/138 (76%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 || ||| || || || ||||| ||||| ||||||| |||||| || | | || | || Sbjct 29832 TCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAAAGGGTCCGTCC 29891 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || || || || || || || || |||| ||| ||||| || ||||||||||| || Sbjct 29892 ATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGAATACCTTCTTT 29951 Query 225618 GTCTTGGATCTTTTGCTT 225635 |||||| || |||||||| Sbjct 29952 GTCTTGAAT-TTTTGCTT 29968 >seq629 Length=499154 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||| | |||||| || | ||| || || ||||| | |||||||| | | || Sbjct 6187 ACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGT 6128 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| ||||| || || ||||| ||||| |||| |||||||| || || || || Sbjct 6127 ACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCC 6068 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||||| || ||| || || ||||| | ||||| || || Sbjct 6067 TTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAA 6008 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | || || | || | |||||| Sbjct 6007 AGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || ||| | || || || || || ||||||||||||| ||||| || | | |||| Sbjct 5955 AGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGA 5896 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || || || || ||||| ||||| |||| |||||||| || || || |||||| Sbjct 5895 CCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCC 5836 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||||||||||||| || ||| || || ||||| | ||||| || || ||| Sbjct 5835 TTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTG 5776 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || | || || | || | |||||| Sbjct 5775 ATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 >seq19878 Length=1465 Score = 109 bits (120), Expect = 1e-18 Identities = 101/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 521 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 580 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | || Sbjct 581 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 640 Query 7855 GTTAGCT 7861 ||||||| Sbjct 641 GTTAGCT 647 >seq10459 Length=17825 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| ||||| ||||| || ||||| || ||||| || || || Sbjct 17162 GAAAATTTGTCCATCAGTAATGGAGATTACATTGGTTGGGATGTATGCAGACACGTCCCC 17103 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 ||||| || |||| ||| || | |||||||| || || || ||||| Sbjct 17102 AGCTTGGGTCTCGATAACGGGAAGAGCTGTTAGGGACCCTCCTCCAAA 17055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1188149201994342