Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq4435 105 5e-18 seq1267 87.8 1e-12 seq5467 84.2 2e-11 >seq4435 Length=89394 Score = 105 bits (116), Expect = 5e-18 Identities = 167/236 (71%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 101007 TATTG-CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAA 101065 ||||| || || |||| ||| | |||| ||| | ||||||||||| ||||| |||||| Sbjct 36733 TATTGGCCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAA 36674 Query 101066 TCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCT 101125 || | || ||| | |||||||||||| || || ||| | || | ||||||||||||| Sbjct 36673 TCTGACAGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCT 36614 Query 101126 ACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGAC 101185 || | || || || || ||| || |||||||| | | || || ||| Sbjct 36613 GGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGG-- 36556 Query 101186 GTTGT--TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| | || | ||| || ||||| || |||| || |||| ||||||||||||| Sbjct 36555 GTTCTACCTCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 >seq1267 Length=316221 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| |||| | || | ||| | ||| | ||||| |||||||||||||||||||| | Sbjct 206201 TGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAG 206260 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 | |||| | ||||||||| || || || ||| | || | ||| || |||||| | Sbjct 206261 ATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAG 206320 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT- 101188 | | ||||||||||| || || ||||||| | | || || ||| ||| Sbjct 206321 GGATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGG--GTTC 206378 Query 101189 -GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | |||||| |||||||| || | ||||| | ||| || ||||| Sbjct 206379 AACTTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 >seq5467 Length=66102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | |||| || | ||||||||| ||||| |||||||| || | Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || ||| |||| |||||| || ||| | || || ||||| |||||| || Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT- 101190 | ||||||||||| ||||||| ||| |||| | | || || | | ||| | Sbjct 29941 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACT--AGGTTCTA 29998 Query 101191 -TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | ||||| |||||||| || | ||||| | ||| || ||||| Sbjct 29999 CTTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408228916830387