Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3845 114 1e-20 seq6658 105 6e-18 seq5418 102 7e-17 >seq3845 Length=110360 Score = 114 bits (126), Expect = 1e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || ||||| ||| || || || || ||||| | ||||||||| ||| Sbjct 72983 TCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCTTA 72924 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | |||||||||||||||||||||||||| || || || ||||| ||| Sbjct 72923 AGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGGCT 72864 Query 4692 ACTAATCG 4699 || | ||| Sbjct 72863 ACAACTCG 72856 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||||||| || || ||||| |||| | || |||||||| ||||| | |||||| || Sbjct 72345 TGGGTCTCTGATGTATGTGTCAATTAACAAACTGTACATTTCTGAATGGACATTTTCAAT 72286 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 ||||| || || || ||||| || ||||||||||||||||||||||| | | |||||| Sbjct 72285 GGCAATTTGGAAACCATAAAAACACCTAGCTTCTGTTACTTGAACTTCCTGGCTAAATCT 72226 Query 4928 TTCTAC 4933 ||| || Sbjct 72225 TTCCAC 72220 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 ||||| || || || || ||||| || ||||| || |||| | ||||| ||||||| Sbjct 71034 TTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTGT 70975 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCA 5057 ||||| || || | || | ||| || || ||||| | | |||||||||||| Sbjct 70974 TGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTCT 70915 Query 5058 ACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATC 5117 |||||||| || || || || ||||| || ||||| ||| || || || || | ||| Sbjct 70914 ACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAATG 70855 Query 5118 GGAAGTATGACAAATCT 5134 |||| || |||||||| Sbjct 70854 GGAAAAATAACAAATCT 70838 >seq6658 Length=47451 Score = 105 bits (116), Expect = 6e-18 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| |||||||||||| || || || || ||||| | || ||||| || Sbjct 24836 TCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCTTT 24895 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | ||| || |||| |||||| || || |||||||| || |||||||| || || || ||| Sbjct 24896 AACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGGCT 24955 Query 4692 ACTAATCG----GGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 || | ||| ||| || | | || |||| | |||||| || | ||||| | Sbjct 24956 ACAAGTCGCTCAGGA----AATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATC 25011 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| || |||||||| || || | || | ||||| || || Sbjct 25012 AGCCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAA 25053 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 ||||| | | |||||| ||||| | || || ||||||||||||||||| || || | Sbjct 25520 GGGTCCTTCACATAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACT 25579 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 ||||||||||| | ||| || || | |||||| || | || || || | ||| |||| | Sbjct 25580 GCAATCTGAAAGCTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATCGT 25639 Query 4929 TCTAC 4933 |||| Sbjct 25640 GCTAC 25644 >seq5418 Length=65370 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| | |||||| || ||||| || ||||| || ||||| || ||||| |||||||| || Sbjct 6926 TACAAGGTTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAAT 6867 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||||| ||| ||| || | | || ||||| | ||| || | ||| ||||| Sbjct 6866 AAAGTGTCTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAAC 6807 Query 5051 TTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 |||||| | |||||||| || || || || | |||||||| ||| || || || || Sbjct 6806 TTCTTCTGCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTA 6747 Query 5111 CTGAATCGGAAGTATGACAAATCT 5134 | ||| |||| || ||||| || Sbjct 6746 TTCAATGGGAAACATTACAAACCT 6723 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 || ||||| ||||||||||| || || |||| | || || || || ||||| || | Sbjct 8824 CGATCAGCAACAAATTCTATGTATTGTTTCATCAATTGACAATTCATACCAATCAAAGCC 8765 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 || |||| || | || ||||| |||||||| || | || |||||| | || || || Sbjct 8764 ACTGGTAAAGCATCAGTTAAAAATTCTTGTTCAATTTTCACAGCTTCTTTAATAATCTCC 8705 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 || | | || || ||||||||||| || | | | ||||| || || ||||||||| Sbjct 8704 ACTACTCTCTCCTTGGATGGTTTATTGACAAGATGACTAAACAGCAAGCAGGCAAAATCA 8645 Query 4560 CAATGCAAACC 4570 || || | ||| Sbjct 8644 CAGTGTAGACC 8634 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4801 TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATAT 4860 ||||| ||| || | || || ||||| |||| | ||||||||||| || || | || Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473 Query 4861 TTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTAC 4920 |||| || ||||| || || || ||||| || |||||||| ||||| || ||||| | | Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTCCTGGC 7413 Query 4921 AAAATC 4926 ||||| Sbjct 7412 TAAATC 7407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425556937937069