Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq994 172 8e-38 seq1632 141 1e-28 seq6658 138 2e-27 seq3845 125 1e-23 seq5418 114 2e-20 >seq994 Length=361151 Score = 172 bits (190), Expect = 8e-38 Identities = 324/467 (69%), Gaps = 17/467 (4%) Strand=Plus/Minus Query 171529 GTACGAGCCCGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAACGAGGGTTC 171588 ||| ||||| |||||||| ||||| ||||| || | ||| ||| | | || || | Sbjct 158602 GTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGATTACCTAGAAGATGGAGC 158543 Query 171589 GATGGCGGATTCTGCAGATCTAGTAGTATTGGGGGCATATTATGGAAAAGGAACAAAGGG 171648 ||||| ||||| || ||||| || || | || ||||||| ||||| |||| || || Sbjct 158542 AATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTTTGGAACTGGAAATAAAGG 158483 Query 171649 TGGAATGATGGCAGTCTTTTTGATGGGCTGTTATGACGATGACTCTGGT---AAATGGAA 171705 |||||||||| || | ||| ||||||| |||| ||||| || || |||||| Sbjct 158482 TGGAATGATGTCAATATTTCTGATGGGATGTT---ACGATCCTGCTAGTAAAAAATGGTG 158426 Query 171706 AACTGTGACTAAA-TG--TTCTGGACATGATGATAATACTTT--AAGGGCTTTACA-GGA 171759 ||||| || ||| || | |||||||||||| |||||| || || | | || Sbjct 158425 TACTGTTACAAAAGTGCATGGAGGACATGATGATGCTACTTTTGAAAAACTCCAAACTGA 158366 Query 171760 CCAATTAAAGATGATTAAAATTAATAAGAACCCCCAAAAAATTCCAGAGTGGTTAGTAGT 171819 | | | |||| ||||||| ||| |||| ||| |||| | ||| | ||| Sbjct 158365 GC---TGGACATGAAAAAAATTAGGAAGGACCCAAGTAAAGTTCCTGCTTGGCTGAAAGT 158309 Query 171820 TAATAAAATATATATTCCCGATTTTGTAGTAGAGGATCCTAAACAATCTCCTATATGGGA 171879 ||||||| ||||| |||||||| | | ||||||||| | || || ||||||| Sbjct 158308 GAATAAAACTCTCATTCCTGATTTTGTTGCTAATGATCCTAAAAACTCCCCAGTATGGGA 158249 Query 171880 GATTTCAGGAGCTGAGTTCACATCATC-CAAGTCGCATACAGCAAATGGAATATCTATTA 171938 ||| ||||| || || ||| | | || || |||||||| |||||||| |||||| Sbjct 158248 AATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-CATACAGCCAATGGAATCTCTATTC 158190 Query 171939 GATTTCCTAGATTCACTAGGATTAGAGACGATAAAACATGGAAAGAA 171985 | ||||| ||| | | | || |||| || ||||||||||||||| Sbjct 158189 GTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAACATGGAAAGAA 158143 Score = 98.7 bits (108), Expect = 1e-15 Identities = 238/360 (66%), Gaps = 3/360 (1%) Strand=Plus/Minus Query 170984 CCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTAAAAAATTTCCATCTGGA 171043 || |||||||| ||| | || |||||| | | || || || ||||||||| |||| Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091 Query 171044 ATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTCATAAAAACAATAATAAT 171103 |||| ||| ||| |||| |||||||||||| | || || || || ||| | | || Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031 Query 171104 TTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTTACCACATAAAGTTGATTATCTCAAG 171163 ||| | ||||| ||| | ||||| || | || || ||| || |||| || Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971 Query 171164 GAATACCTTCCTAAAGCATTTAAAAAAGCTACCTCTATTATCTTGGATTCCGAAATTGTT 171223 |||||| | |||||||| ||| |||||| | | || | ||| ||| | | Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911 Query 171224 CTAGTTGATGAACATAATG---TTCCACTTCCGTTTGGAAGTCTAGGAATACACAAAAAG 171280 || || || || | || |||||||| ||||||| ||||| | || ||||| Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851 Query 171281 AAAGAGTACAAAAATGCTAATATGTGTTTGTTCGTCTTTGATTGTTTATACTTTGATGGA 171340 | | ||| |||| | | |||||||||| |||||||| || | ||| | ||||| Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791 >seq1632 Length=265768 Score = 141 bits (156), Expect = 1e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||| | | |||||||||||||||||||| |||| | ||| ||||||| || || || Sbjct 30709 ATACAACTGTTCAAATTCATCTCCCCAACATTCATGAAGTCCTGGGCATTGATGGGGACA 30768 Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034 ||| || ||||| ||||| | | ||||| |||||| || || |||||||| | Sbjct 30769 CATTAAAGACCACATTCCATCATTTTCTACTCGAGACATAAACAGGTCTGGTATCCACAA 30828 Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAG 78094 |||| ||| | || || | || |||||| || || || ||||| ||||| ||||| || Sbjct 30829 AGCATAAAACAAGTCACGAGCTCGATGTTCCTCCTTACCAGTATTTTTTTTCAGATCCAG 30888 Query 78095 AAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 ||| || | |||||| | |||||||||||| | ||| | || | | | ||||||| Sbjct 30889 AAATTCAAAAATATCTGCATGCCATGGTTCCAAATAGACAGCAAAAGCACCAGGTC 30944 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423 ||||||||||| || || | |||| || |||||| || || || | ||||| ||| Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214 Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAA 77483 ||||| || || ||||||| | || || ||| ||||| |||| ||||| |||||| Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274 Query 77484 TGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTC 77543 | | |||||| ||||||||||||| |||||||| ||||| ||||| |||| |||| | Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334 Query 77544 TTATTGGAAATTTTAGC 77560 || || || |||| || Sbjct 21335 TTGTTTGATTTTTTGGC 21351 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || |||||||||||||| |||||||| |||| | || || ||||| ||||||| Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||||| ||||| || || ||||||| ||||| |||| || || || | Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264 Query 76969 TTTGAGGAATTTCCCAAATAGTT 76991 ||| ||||||||||| | |||| Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 77116 GATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATG 77175 ||||| || ||||||||| || || | || | ||| | ||| ||||| || || || | Sbjct 18440 GATTACTTACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAG 18499 Query 77176 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235 |||| | ||| ||||||||||| | ||| || ||||| |||||||||||||||||||| | Sbjct 18500 GTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAA 18559 Query 77236 CCAATAAACTATTTCTGAGACCATGT 77261 | ||| || ||||| | |||||| Sbjct 18560 TGAGTAAGCTGTTTCTCAAGCCATGT 18585 >seq6658 Length=47451 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 |||| ||||| | ||||||||||||||||||||||| || || || || || || |||| Sbjct 26426 CCAAGTTCTCCATCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAA 26485 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 | | | |||| | | | | || ||||| || || ||||| || | || |||| Sbjct 26486 AGTGTCTTTCTTCAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTT 26545 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 ||||||| ||||| || || ||||||||||| || ||||||| ||| ||||| ||| | Sbjct 26546 CTTCAGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACT 26605 Query 48703 GGATTGGGAAAATAACAAATCTATTTGGATTTTTTG 48738 ||||| ||||| ||||||| ||| ||||||| Sbjct 26606 CAATTGGTAAAATTACAAATCGTCCTGGGTTTTTTG 26641 Score = 102 bits (112), Expect = 1e-16 Identities = 160/224 (71%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||||||| || || | || ||||| | ||| | || || Sbjct 24836 TCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCTTT 24895 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| || || | || || || || |||||||| || |||||||| || || || || Sbjct 24896 AACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGGCT 24955 Query 48285 GTAAGTCTCTCTCCGTAACTGG--CTTCGTTGTGTATCCACC--GTT--GTGCCCAATCA 48338 ||||| ||| | || ||| | | |||| |||| | | ||| | ||||||||| Sbjct 24956 ACAAGTCGCTCA--GGAAATGGGGCAGCATTGT-TATCAATCCAGTTCAGGGCCCAATCA 25012 Query 48339 GCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 ||||||||||| ||||| || | ||||| |||||||| ||||| Sbjct 25013 GCCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAAGAG 25056 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 || || || ||||||||||| || ||||| |||||||| || || || || || | ||| Sbjct 25523 TCCTTCACATAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACTGCA 25582 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGT 48518 |||||||| | ||| ||||| | ||||| || ||||| |||||| ||| |||||| Sbjct 25583 ATCTGAAAGCTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATCGT 25639 >seq3845 Length=110360 Score = 125 bits (138), Expect = 1e-23 Identities = 166/226 (73%), Gaps = 11/226 (5%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| ||| ||||| | ||| ||||| || || | || || Sbjct 72983 TCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCTTA 72924 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| ||||||| || || || ||||||||||||||||| || || || ||||| || Sbjct 72923 AGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGGCT 72864 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTG--TG---TATCCACCGTT--GTGCCCAATC 48337 || || ||| || || | ||| || | || |||||| ||| | |||||||| Sbjct 72863 ACAACTCGCTCACCAAAAGTAGCT--GTAGGATGACCTATCCA--GTTGAGAGCCCAATC 72808 Query 48338 AGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 || |||||||| |||||||||| ||||| || ||||| || ||| Sbjct 72807 TGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGA 72762 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48527 ATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATA 48586 ||| ||||| || || ||||||||||||||||| || || | | || |||||| | Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976 Query 48587 TTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 48646 || ||| | | | || | ||| | | | ||||| || | ||| |||||||| Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916 Query 48647 AGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGAT 48706 | ||||| ||||| ||||||||||| |||||||| | ||| || || ||||| || Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856 Query 48707 TGGGAAAATAACAAATCTATTTGGATTTT 48735 || |||||||||||||| ||||||| Sbjct 70855 GGGAAAAATAACAAATCTCCGAGGATTTT 70827 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 |||||||||| ||||||| | ||| | | ||||| | | ||| || || ||| Sbjct 75609 TTAAAAGTCAGCATCTAATGTAAACTTGTGTTCTTCACGTCTCGCCATGACCCCACATTT 75550 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || ||||| || || ||||| || || ||||||||||| ||||| | ||| Sbjct 75549 CTGATACTCGCCCACCTTCTTTTCAAAAAAGTTTGTCTTGCCTTCCAAAGATATGTGTTC 75490 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||||||||||| ||||| | ||||||| || Sbjct 75489 CATAAAATCAAAAGGATTTTCCACATTATAGAT 75457 >seq5418 Length=65370 Score = 114 bits (126), Expect = 2e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 48528 TTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT 48587 || ||||| ||||| ||||||||||||||||| || || || ||||| |||||| | | Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 48588 TTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 48647 |||| | | | | | |||||||| | ||| || |||| || |||||||| Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 48648 GCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATT 48707 |||||||||||||| |||||||| | || ||||| | ||| || || ||||| || Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 48708 GGGAAAATAACAAATCTATTTGGATTTT 48735 || || || ||||| || | || |||| Sbjct 6739 GGAAACATTACAAACCTTCTAGGGTTTT 6712 Score = 104 bits (114), Expect = 3e-17 Identities = 115/153 (75%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCCCATTT 47850 ||||||| ||| | || | || ||| | || ||||| || || ||| ||||| | Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | |||||||||||||| || || || || || || ||||||||||| || |||| || Sbjct 9156 TCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGTT 9097 Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAA 47943 ||||||||||||||||||| || |||| |||| Sbjct 9096 CCATAAAATCAAATGGATTTTCTCCATTGTAAA 9064 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 ||||||| ||| || | ||| || || ||||| | |||||||||||| ||||||| || Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTAC 48510 ||||||| || || || || || |||||||| || ||||| || | ||| || ||| | Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTCCTGGC 7413 Query 48511 AAAATCGTTC 48520 |||||| || Sbjct 7412 TAAATCGCTC 7403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692178473135520