Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq994 172 8e-38
seq1632 141 1e-28
seq6658 138 2e-27
seq3845 125 1e-23
seq5418 114 2e-20
>seq994
Length=361151
Score = 172 bits (190), Expect = 8e-38
Identities = 324/467 (69%), Gaps = 17/467 (4%)
Strand=Plus/Minus
Query 171529 GTACGAGCCCGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAACGAGGGTTC 171588
||| ||||| |||||||| ||||| ||||| || | ||| ||| | | || || |
Sbjct 158602 GTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGATTACCTAGAAGATGGAGC 158543
Query 171589 GATGGCGGATTCTGCAGATCTAGTAGTATTGGGGGCATATTATGGAAAAGGAACAAAGGG 171648
||||| ||||| || ||||| || || | || ||||||| ||||| |||| || ||
Sbjct 158542 AATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTTTGGAACTGGAAATAAAGG 158483
Query 171649 TGGAATGATGGCAGTCTTTTTGATGGGCTGTTATGACGATGACTCTGGT---AAATGGAA 171705
|||||||||| || | ||| ||||||| |||| ||||| || || ||||||
Sbjct 158482 TGGAATGATGTCAATATTTCTGATGGGATGTT---ACGATCCTGCTAGTAAAAAATGGTG 158426
Query 171706 AACTGTGACTAAA-TG--TTCTGGACATGATGATAATACTTT--AAGGGCTTTACA-GGA 171759
||||| || ||| || | |||||||||||| |||||| || || | | ||
Sbjct 158425 TACTGTTACAAAAGTGCATGGAGGACATGATGATGCTACTTTTGAAAAACTCCAAACTGA 158366
Query 171760 CCAATTAAAGATGATTAAAATTAATAAGAACCCCCAAAAAATTCCAGAGTGGTTAGTAGT 171819
| | | |||| ||||||| ||| |||| ||| |||| | ||| | |||
Sbjct 158365 GC---TGGACATGAAAAAAATTAGGAAGGACCCAAGTAAAGTTCCTGCTTGGCTGAAAGT 158309
Query 171820 TAATAAAATATATATTCCCGATTTTGTAGTAGAGGATCCTAAACAATCTCCTATATGGGA 171879
||||||| ||||| |||||||| | | ||||||||| | || || |||||||
Sbjct 158308 GAATAAAACTCTCATTCCTGATTTTGTTGCTAATGATCCTAAAAACTCCCCAGTATGGGA 158249
Query 171880 GATTTCAGGAGCTGAGTTCACATCATC-CAAGTCGCATACAGCAAATGGAATATCTATTA 171938
||| ||||| || || ||| | | || || |||||||| |||||||| ||||||
Sbjct 158248 AATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-CATACAGCCAATGGAATCTCTATTC 158190
Query 171939 GATTTCCTAGATTCACTAGGATTAGAGACGATAAAACATGGAAAGAA 171985
| ||||| ||| | | | || |||| || |||||||||||||||
Sbjct 158189 GTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAACATGGAAAGAA 158143
Score = 98.7 bits (108), Expect = 1e-15
Identities = 238/360 (66%), Gaps = 3/360 (1%)
Strand=Plus/Minus
Query 170984 CCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTAAAAAATTTCCATCTGGA 171043
|| |||||||| ||| | || |||||| | | || || || ||||||||| ||||
Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091
Query 171044 ATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTCATAAAAACAATAATAAT 171103
|||| ||| ||| |||| |||||||||||| | || || || || ||| | | ||
Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031
Query 171104 TTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTTACCACATAAAGTTGATTATCTCAAG 171163
||| | ||||| ||| | ||||| || | || || ||| || |||| ||
Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971
Query 171164 GAATACCTTCCTAAAGCATTTAAAAAAGCTACCTCTATTATCTTGGATTCCGAAATTGTT 171223
|||||| | |||||||| ||| |||||| | | || | ||| ||| | |
Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911
Query 171224 CTAGTTGATGAACATAATG---TTCCACTTCCGTTTGGAAGTCTAGGAATACACAAAAAG 171280
|| || || || | || |||||||| ||||||| ||||| | || |||||
Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851
Query 171281 AAAGAGTACAAAAATGCTAATATGTGTTTGTTCGTCTTTGATTGTTTATACTTTGATGGA 171340
| | ||| |||| | | |||||||||| |||||||| || | ||| | |||||
Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791
>seq1632
Length=265768
Score = 141 bits (156), Expect = 1e-28
Identities = 173/236 (73%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974
||| | | |||||||||||||||||||| |||| | ||| ||||||| || || ||
Sbjct 30709 ATACAACTGTTCAAATTCATCTCCCCAACATTCATGAAGTCCTGGGCATTGATGGGGACA 30768
Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034
||| || ||||| ||||| | | ||||| |||||| || || |||||||| |
Sbjct 30769 CATTAAAGACCACATTCCATCATTTTCTACTCGAGACATAAACAGGTCTGGTATCCACAA 30828
Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAG 78094
|||| ||| | || || | || |||||| || || || ||||| ||||| ||||| ||
Sbjct 30829 AGCATAAAACAAGTCACGAGCTCGATGTTCCTCCTTACCAGTATTTTTTTTCAGATCCAG 30888
Query 78095 AAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150
||| || | |||||| | |||||||||||| | ||| | || | | | |||||||
Sbjct 30889 AAATTCAAAAATATCTGCATGCCATGGTTCCAAATAGACAGCAAAAGCACCAGGTC 30944
Score = 131 bits (144), Expect = 2e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423
||||||||||| || || | |||| || |||||| || || || | ||||| |||
Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214
Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAA 77483
||||| || || ||||||| | || || ||| ||||| |||| ||||| ||||||
Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274
Query 77484 TGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTC 77543
| | |||||| ||||||||||||| |||||||| ||||| ||||| |||| |||| |
Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334
Query 77544 TTATTGGAAATTTTAGC 77560
|| || || |||| ||
Sbjct 21335 TTGTTTGATTTTTTGGC 21351
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| || |||||||||||||| |||||||| |||| | || || ||||| |||||||
Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
||| |||||||| ||||| || || ||||||| ||||| |||| || || || |
Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264
Query 76969 TTTGAGGAATTTCCCAAATAGTT 76991
||| ||||||||||| | ||||
Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287
Score = 111 bits (122), Expect = 2e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 77116 GATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATG 77175
||||| || ||||||||| || || | || | ||| | ||| ||||| || || || |
Sbjct 18440 GATTACTTACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAG 18499
Query 77176 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235
|||| | ||| ||||||||||| | ||| || ||||| |||||||||||||||||||| |
Sbjct 18500 GTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAA 18559
Query 77236 CCAATAAACTATTTCTGAGACCATGT 77261
| ||| || ||||| | ||||||
Sbjct 18560 TGAGTAAGCTGTTTCTCAAGCCATGT 18585
>seq6658
Length=47451
Score = 138 bits (152), Expect = 2e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582
|||| ||||| | ||||||||||||||||||||||| || || || || || || ||||
Sbjct 26426 CCAAGTTCTCCATCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAA 26485
Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642
| | | |||| | | | | || ||||| || || ||||| || | || ||||
Sbjct 26486 AGTGTCTTTCTTCAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTT 26545
Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702
||||||| ||||| || || ||||||||||| || ||||||| ||| ||||| ||| |
Sbjct 26546 CTTCAGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACT 26605
Query 48703 GGATTGGGAAAATAACAAATCTATTTGGATTTTTTG 48738
||||| ||||| ||||||| ||| |||||||
Sbjct 26606 CAATTGGTAAAATTACAAATCGTCCTGGGTTTTTTG 26641
Score = 102 bits (112), Expect = 1e-16
Identities = 160/224 (71%), Gaps = 9/224 (4%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| || || | ||||||| || || | || ||||| | ||| | || ||
Sbjct 24836 TCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCTTT 24895
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284
| ||| || || | || || || || |||||||| || |||||||| || || || ||
Sbjct 24896 AACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGGCT 24955
Query 48285 GTAAGTCTCTCTCCGTAACTGG--CTTCGTTGTGTATCCACC--GTT--GTGCCCAATCA 48338
||||| ||| | || ||| | | |||| |||| | | ||| | |||||||||
Sbjct 24956 ACAAGTCGCTCA--GGAAATGGGGCAGCATTGT-TATCAATCCAGTTCAGGGCCCAATCA 25012
Query 48339 GCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382
||||||||||| ||||| || | ||||| |||||||| |||||
Sbjct 25013 GCCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAAGAG 25056
Score = 95.1 bits (104), Expect = 2e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461
|| || || ||||||||||| || ||||| |||||||| || || || || || | |||
Sbjct 25523 TCCTTCACATAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACTGCA 25582
Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGT 48518
|||||||| | ||| ||||| | ||||| || ||||| |||||| ||| ||||||
Sbjct 25583 ATCTGAAAGCTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATCGT 25639
>seq3845
Length=110360
Score = 125 bits (138), Expect = 1e-23
Identities = 166/226 (73%), Gaps = 11/226 (5%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
||||||||||| || | ||| ||| ||||| | ||| ||||| || || | || ||
Sbjct 72983 TCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCTTA 72924
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284
||||| ||||||| || || || ||||||||||||||||| || || || ||||| ||
Sbjct 72923 AGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGGCT 72864
Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTG--TG---TATCCACCGTT--GTGCCCAATC 48337
|| || ||| || || | ||| || | || |||||| ||| | ||||||||
Sbjct 72863 ACAACTCGCTCACCAAAAGTAGCT--GTAGGATGACCTATCCA--GTTGAGAGCCCAATC 72808
Query 48338 AGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383
|| |||||||| |||||||||| ||||| || ||||| || |||
Sbjct 72807 TGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGA 72762
Score = 102 bits (112), Expect = 1e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48527 ATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATA 48586
||| ||||| || || ||||||||||||||||| || || | | || |||||| |
Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976
Query 48587 TTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 48646
|| ||| | | | || | ||| | | | ||||| || | ||| ||||||||
Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916
Query 48647 AGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGAT 48706
| ||||| ||||| ||||||||||| |||||||| | ||| || || ||||| ||
Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856
Query 48707 TGGGAAAATAACAAATCTATTTGGATTTT 48735
|| |||||||||||||| |||||||
Sbjct 70855 GGGAAAAATAACAAATCTCCGAGGATTTT 70827
Score = 89.7 bits (98), Expect = 7e-13
Identities = 112/153 (73%), Gaps = 3/153 (2%)
Strand=Plus/Minus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851
|||||||||| ||||||| | ||| | | ||||| | | ||| || || |||
Sbjct 75609 TTAAAAGTCAGCATCTAATGTAAACTTGTGTTCTTCACGTCTCGCCATGACCCCACATTT 75550
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
||||| || ||||| || || ||||| || || ||||||||||| ||||| | |||
Sbjct 75549 CTGATACTCGCCCACCTTCTTTTCAAAAAAGTTTGTCTTGCCTTCCAAAGATATGTGTTC 75490
Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAT 47944
|||||||||||| ||||| | ||||||| ||
Sbjct 75489 CATAAAATCAAAAGGATTTTCCACATTATAGAT 75457
>seq5418
Length=65370
Score = 114 bits (126), Expect = 2e-20
Identities = 150/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 48528 TTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT 48587
|| ||||| ||||| ||||||||||||||||| || || || ||||| |||||| | |
Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860
Query 48588 TTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 48647
|||| | | | | | |||||||| | ||| || |||| || ||||||||
Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800
Query 48648 GCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATT 48707
|||||||||||||| |||||||| | || ||||| | ||| || || ||||| ||
Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740
Query 48708 GGGAAAATAACAAATCTATTTGGATTTT 48735
|| || || ||||| || | || ||||
Sbjct 6739 GGAAACATTACAAACCTTCTAGGGTTTT 6712
Score = 104 bits (114), Expect = 3e-17
Identities = 115/153 (75%), Gaps = 3/153 (2%)
Strand=Plus/Minus
Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCCCATTT 47850
||||||| ||| | || | || ||| | || ||||| || || ||| ||||| |
Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157
Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910
| |||||||||||||| || || || || || || ||||||||||| || |||| ||
Sbjct 9156 TCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGTT 9097
Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAA 47943
||||||||||||||||||| || |||| ||||
Sbjct 9096 CCATAAAATCAAATGGATTTTCTCCATTGTAAA 9064
Score = 95.1 bits (104), Expect = 2e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450
||||||| ||| || | ||| || || ||||| | |||||||||||| ||||||| ||
Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473
Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTAC 48510
||||||| || || || || || |||||||| || ||||| || | ||| || ||| |
Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTCCTGGC 7413
Query 48511 AAAATCGTTC 48520
|||||| ||
Sbjct 7412 TAAATCGCTC 7403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692178473135520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |