Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq994 185 1e-41 seq6658 149 9e-31 seq3845 140 5e-28 seq1632 132 7e-26 seq5418 131 2e-25 >seq994 Length=361151 Score = 185 bits (204), Expect = 1e-41 Identities = 677/1047 (65%), Gaps = 26/1047 (2%) Strand=Plus/Minus Query 169552 CCTATGTTGGCCGAATCATGCGATTCTGTTAACAAGGCATTTAAAAAATTTCCATCTGGG 169611 || ||||| || ||| | ||| |||||| | | || || || ||||||||| ||| Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091 Query 169612 ATGTTTGCAGAAGTCAAATATGACGGTGAACGAGTGCAAGTTCATAAAAATAATAACAAC 169671 |||| ||| ||| | || ||||| |||||| | || || || || ||| || |||| Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031 Query 169672 TTTGCCTTCTTTAGTAGAAATATGAAACCAGTTTTACCACATAAAGTTGATTATCTCAAA 169731 ||| | |||||| ||| | | ||||| || | || || ||| || |||| ||| Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971 Query 169732 GAATACCTTCCTAAAGCATTTAAAAAAGCTACGTCTATTATCTTGGATTCTGAAATTGTT 169791 |||||| | |||||||| ||| |||||| | | || | ||| |||| | | Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911 Query 169792 CTAGTTGACGAACACAAT---ATACCACTTCCGTTTGGAAGTTTAGGAATACACAAAAAG 169848 || || ||| || | | | |||||||| ||||||| |||||| | || ||||| Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851 Query 169849 AAAGAATATAAAAACTCTAATATGTGTTTGTTCGTCTTTGATTGTCTATACTTTGATGGA 169908 | | || | | | | |||||||||| |||||||| || | ||| | ||||| Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791 Query 169909 TTTGATATGACTGATATCCCATTGGTTGATAGAAG----ATCTTTTCTCA-AAGATGTAA 169963 || | | || || || ||| ||| | || | ||||| || ||| | Sbjct 158790 GAAAATCTAATGGAGCGTCCTTTATCTGAGAGACGCAACATTCTGTCTCAGAACATG--A 158733 Query 169964 TGACAGAAATACCTAATAGAATAGTATTTTCGGAATTGACAAATATTACTAACGAATCAC 170023 || || || ||| || | ||||| ||| ||| | | | | || | Sbjct 158732 TG---GAGATTAAAAATCACATCATGTTTTCAGAAATGAAGCTTGTGATAGAAAAAGAAG 158676 Query 170024 AACTGACAGATGT-ATTAGATGATGCACTAACAAGAAAACTAGAAGGTTTGGTTTTAAAA 170082 ||| | | | | ||| || || ||| || ||||||| | ||| | ||| Sbjct 158675 TACTAAAAAAAATGATTCAATCTGCCATTAATCAGGGTT-TAGAAGGGCTAGTTCTGAAA 158617 Query 170083 GATATTAATGGTATATATGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTAC 170142 | | || | ||||||||||||||||| ||||| ||||| || | ||| ||| Sbjct 158616 GGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGATTAC 158557 Query 170143 TTGAATGAGGGTTCGATGGCGGATTCTGCAGATTTAGTAGTATTGGGGGCATATTATGGA 170202 | | || || | ||||| ||||| || ||| | || || | || ||||||| |||| Sbjct 158556 CTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTTTGGA 158497 Query 170203 AAAGGAACAAAGGGTGGAATGATGGCAGTATTTTTGATGGGTTGCTACGATGACGACTCT 170262 | |||| || |||||||||||| || ||||| ||||||| || |||||| | || Sbjct 158496 ACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGGGATGTTACGATCCTG---CT 158440 Query 170263 GGT---AAATGGAAGACTGTAACTAAA-TG--TTCTGGACATGATGATAACACTTTAAGG 170316 || |||||| ||||| || ||| || | |||||||||||| ||||| Sbjct 158439 AGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATGATGATGCTACTTTTGAA 158380 Query 170317 GTTTTGCAAGACCAATTAAAGATGATTAAAATAAGTAAGGATCCCaaaaaaaTTCCAGAG 170376 | ||| | | | |||| ||||| || ||||| || | ||| |||| | Sbjct 158379 AAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACCCAAGTAAAGTTCCTGCT 158320 Query 170377 TGGTTAGTAGTTAATAAAATATATATTCCCGATTTTGTAGTAGAGGATCCTACACAATCT 170436 ||| | ||| ||||||| ||||| |||||||| | | ||||||| | | || Sbjct 158319 TGGCTGAAAGTGAATAAAACTCTCATTCCTGATTTTGTTGCTAATGATCCTAAAAACTCC 158260 Query 170437 CCAATCTGGGAGATTTCAGGAGCTGAGTTCACATCATC-GAAGTCTCATACGGCAAATGG 170495 ||| | ||||| ||| ||||| || || ||| | | ||| || ||||| || ||||| Sbjct 158259 CCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-CATACAGCCAATGG 158201 Query 170496 AATATCTATTAGATTTCCTAGATTCAGTAGGATCAGAGACGATAAGACATGGAAAGAATC 170555 ||| |||||| | ||||| ||| | | ||| |||| || || |||||||||||| | Sbjct 158200 AATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAACATGGAAAGAAGC 158141 Query 170556 TACCCATCTACACGATTTAGTAAAATT 170582 || | |||| || ||| | |||| Sbjct 158140 CACAAACTTACAGGAATTACAAGAATT 158114 >seq6658 Length=47451 Score = 149 bits (164), Expect = 9e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 ||| ||||| ||||||||||||||||||||||||| || ||||| || || || ||||| Sbjct 26427 CAAGTTCTCCATCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAA 26486 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 | | |||| || | | | || ||||| || || ||||| || | || ||||| Sbjct 26487 GTGTCTTTCTTCAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTC 26546 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 |||||| |||||||| || ||||||||||| || ||||||| ||| ||||| | || | Sbjct 26547 TTCAGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACTC 26606 Query 47193 GATCGGAAAAATAACAAATCTATTTGGATTTTTTG 47227 || || ||||| ||||||| ||| ||||||| Sbjct 26607 AATTGGTAAAATTACAAATCGTCCTGGGTTTTTTG 26641 Score = 138 bits (152), Expect = 2e-27 Identities = 165/223 (74%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||||||| || || | |||||||| | ||| | ||| || Sbjct 24836 TCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCTTT 24895 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| || |||| || || || || |||||||| || ||||||||||| ||||| || Sbjct 24896 AACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGGCT 24955 Query 46774 ACAAGTCTCTCTCCGTAACTG-----GCATCATTATGAATCCACCTTTGAGCCCAATCAG 46828 ||||| || ||| | || || |||| |||| |||||| | | |||||||||| Sbjct 24956 ACAAG--TCGCTCAGGAAATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATCAG 25013 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 |||| ||||| ||||| || | ||||| |||||||| ||||| Sbjct 25014 CCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAAGAG 25056 >seq3845 Length=110360 Score = 140 bits (154), Expect = 5e-28 Identities = 174/237 (73%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 46642 CAATGAAGGCCT---TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||| |||||| | ||||||||||| || | ||| ||| ||||| | |||||||| Sbjct 72998 CAAAGAAGGCTTACCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATC 72939 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 || || | ||| || ||||| ||||| | || || || ||||||||||||||||| || Sbjct 72938 AGACCTCTCTTCTTAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCC 72879 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTT 46815 ||||| || || || |||| || ||| || || | || | |||| ||||| | Sbjct 72878 ACAGCAGCAAAGGCTACAACTCGCTCACCAAAAGTAGCTGTAGGATGACCTATCCAGTTG 72819 Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 |||||||||| || || ||||| |||||||||| ||||| || ||||| || ||| Sbjct 72818 AGAGCCCAATCTGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGA 72762 Score = 125 bits (138), Expect = 1e-23 Identities = 157/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 47012 ACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070 |||| ||| ||||| || || ||||||||||||||||| || |||| | || |||| Sbjct 71040 ACAAGATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATA 70981 Query 47071 AAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACT 47130 || | || |||||| | | || | ||| | | | ||||| || | ||| ||| Sbjct 70980 AAGTGTTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACT 70921 Query 47131 TCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATAT 47190 ||||| | ||||||||||| ||||||||||| |||||||| | ||| || || | ||| Sbjct 70920 TCTTCTACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTAT 70861 Query 47191 TGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 | || ||||||||||||||||| ||||||| Sbjct 70860 TCAATGGGAAAAATAACAAATCTCCGAGGATTTT 70827 >seq1632 Length=265768 Score = 132 bits (146), Expect = 7e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||| ||| |||||||||||||||||||| |||| | || || |||| || ||||| Sbjct 30709 ATACAACTGTTCAAATTCATCTCCCCAACATTCATGAAGTCCTGGGCATTGATGGGGACA 30768 Query 76570 CATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAG 76629 ||| || |||||| ||||| | | || || |||||| || || |||||||| | Sbjct 30769 CATTAAAGACCACATTCCATCATTTTCTACTCGAGACATAAACAGGTCTGGTATCCACAA 30828 Query 76630 AGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAG 76689 |||| ||| | || || | || | |||| || || || ||||| ||||| ||||| || Sbjct 30829 AGCATAAAACAAGTCACGAGCTCGATGTTCCTCCTTACCAGTATTTTTTTTCAGATCCAG 30888 Query 76690 GAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTC 76745 || || | |||||| | |||||||||||| | ||| | || | | |||| |||| Sbjct 30889 AAATTCAAAAATATCTGCATGCCATGGTTCCAAATAGACAGCAAAAGCACCAGGTC 30944 Score = 127 bits (140), Expect = 3e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 |||||||| || | ||| ||| |||| || ||| || || ||||||| || || ||| Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 ||||| || || ||||||| | || || ||| ||||| ||| ||||| |||||| Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | | |||||| || ||||||||||| |||||||| ||||| ||||| |||| |||| | Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334 Query 76139 TTATTGGA 76146 || || || Sbjct 21335 TTGTTTGA 21342 Score = 109 bits (120), Expect = 8e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || |||||||||||||| || ||||| |||| | || || ||||| ||||||| Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||||| ||||| || || ||||||| ||||| |||| || || || | Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264 Query 75564 TTTGAGGAATTTCCCAAATAGTT 75586 ||| ||||||||||| | |||| Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||||||||| || || | || | || | ||| ||||| || || || ||||| | ||| Sbjct 18450 TTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAGGTTCAATAGA 18509 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||||||||||| | ||| || |||||||||||||| ||||||||||| | | ||| || Sbjct 18510 CTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAATGAGTAAGCT 18569 Query 75841 ATTTCTGAGACCATGT 75856 ||||| | |||||| Sbjct 18570 GTTTCTCAAGCCATGT 18585 >seq5418 Length=65370 Score = 131 bits (144), Expect = 2e-25 Identities = 162/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | || ||| ||| ||||| |||||||| || ||||||||||| Sbjct 8157 TCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTTTT 8098 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || | || ||||| ||||| || ||||| ||||||||||| || || || Sbjct 8097 AGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAGCC 8038 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTTTGAGCCCAATCAGCC 46830 |||| || ||| || | | || | ||| |||||| | ||||||| || || Sbjct 8037 ACAACTCGCTCACCAAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTCTGCT 7978 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 || ||||||||||| |||| || || || ||||| || || Sbjct 7977 TTCTTCTTTACACATGGCAAGGTCTCAATTGCATTGAAAAG 7937 Score = 123 bits (136), Expect = 4e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 47017 TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATAT 47076 || ||||| ||||| ||||||||||||||||| || ||||| ||||| |||||| | | Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 47077 TTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 47136 |||| || | | | | |||||||| | ||| || |||| || |||||||| Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 47137 GCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATC 47196 |||||||| ||||| |||||||| | || ||||| | ||| || || | |||| || Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 47197 GGAAAAATAACAAATCTATTTGGATTTT 47224 ||||| || ||||| || | || |||| Sbjct 6739 GGAAACATTACAAACCTTCTAGGGTTTT 6712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710378592557760